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Source: kleborate
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3,
python3-setuptools,
ncbi-blast+ <!nocheck>,
mash <!nocheck>,
kaptive <!nocheck>
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/kleborate
Vcs-Git: https://salsa.debian.org/med-team/kleborate.git
Homepage: https://github.com/katholt/Kleborate
Rules-Requires-Root: no
Package: kleborate
Architecture: any
Depends: ${python3:Depends},
${misc:Depends},
ncbi-blast+,
mash,
python3-pkg-resources,
kaptive,
kaptive-data
Recommends: python3-biopython
Description: tool to screen Klebsiella genome assemblies
Kleborate is a tool to screen Klebsiella genome assemblies for:
.
* MLST sequence type
* species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
* ICEKp associated virulence loci: yersiniabactin (ybt),
colibactin (clb)
* virulence plasmid associated loci: salmochelin (iro), aerobactin
(iuc), hypermucoidy (rmpA, rmpA2)
* antimicrobial resistance genes, including quinolone resistance SNPs
and colistin resistance truncations
* K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
and Kaptive
Package: kleborate-examples
Architecture: all
Depends: ${misc:Depends}
Recommends: kleborate
Multi-Arch: foreign
Description: tool to screen Klebsiella genome assemblies (example data)
Kleborate is a tool to screen Klebsiella genome assemblies for:
.
* MLST sequence type
* species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.)
* ICEKp associated virulence loci: yersiniabactin (ybt),
colibactin (clb)
* virulence plasmid associated loci: salmochelin (iro), aerobactin
(iuc), hypermucoidy (rmpA, rmpA2)
* antimicrobial resistance genes, including quinolone resistance SNPs
and colistin resistance truncations
* K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles
and Kaptive
.
This package provides example data end tests that are used in autopkgtest.
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