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Source: ncbi-vdb
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Aaron M. Ucko <ucko@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
d-shlibs (>= 0.104),
dh-python,
python3
Build-Depends-Arch: cmake,
libbz2-dev,
libxml2-dev,
libmagic-dev,
libmbedtls-dev (>= 3),
zlib1g-dev,
libzstd-dev,
flex,
bison,
doxygen,
graphviz,
chrpath
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/ncbi-vdb
Vcs-Git: https://salsa.debian.org/med-team/ncbi-vdb.git
Homepage: https://github.com/ncbi/ncbi-vdb
Rules-Requires-Root: no
Package: libncbi-vdb3
Architecture: amd64 arm64 x32
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends},
ncbi-vdb-data (>= ${source:Version})
Breaks: sra-toolkit (<< 2.11~)
Description: libraries for using data in the INSDC Sequence Read Archives
The (US) National Center for Biotechnology Information (NCBI)'s
Virtual/Vertical Database (VDB) is a highly compressed column-oriented
data warehousing technology developed initially to address the needs
of the Sequence Read Archive (SRA). It is unique in that it builds
databases from smaller parts that can function independently as
_documents_, supports effective and efficient compression, supports
encryption while remaining encrypted on disk, transparent distribution
and remote access.
.
This package contains a runtime library for reading VDB data.
Package: libncbi-vdb-dev
Architecture: amd64 arm64 x32
Multi-Arch: same
Section: libdevel
Depends: ${devlibs:Depends},
${misc:Depends},
libncbi-vdb3 (= ${binary:Version}),
libncbi-wvdb-dev (= ${binary:Version}),
libaec-dev,
libbz2-dev,
libzstd-dev,
zlib1g-dev
Description: libraries for using data in the INSDC Sequence Read Archives (devel)
The (US) National Center for Biotechnology Information (NCBI)'s
Virtual/Vertical Database (VDB) is a highly compressed column-oriented
data warehousing technology developed initially to address the needs
of the Sequence Read Archive (SRA). It is unique in that it builds
databases from smaller parts that can function independently as
_documents_, supports effective and efficient compression, supports
encryption while remaining encrypted on disk, transparent distribution
and remote access.
.
This is the development package for reading VDB data.
Package: ncbi-vdb-data
Architecture: all
Multi-Arch: foreign
Section: libs
Depends: ${misc:Depends}
Recommends: ${python3:Depends}
Provides: python3-vdb
Breaks: libncbi-vdb2 (<< 2.11.2+dfsg-5~)
Replaces: libncbi-vdb2 (<< 2.11.2+dfsg-5~), sra-toolkit (<< 3.2)
Description: schemata and defaults for the INSDC Sequence Read Archives
The (US) National Center for Biotechnology Information (NCBI)'s
Virtual/Vertical Database (VDB) is a highly compressed column-oriented
data warehousing technology developed initially to address the needs
of the Sequence Read Archive (SRA). It is unique in that it builds
databases from smaller parts that can function independently as
_documents_, supports effective and efficient compression, supports
encryption while remaining encrypted on disk, transparent distribution
and remote access.
.
This package contains VDB schemata for SRA data and default
configuration files for VDB libraries. For the time being, it also
contains a Python wrapper for VDB.
Package: libncbi-wvdb3
Architecture: amd64 arm64 x32
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends},
ncbi-vdb-data (>= ${source:Version})
Description: virtual layer update module of ncbi-vdb library
The (US) National Center for Biotechnology Information (NCBI)'s
Virtual/Vertical Database (VDB) is a highly compressed column-oriented
data warehousing technology developed initially to address the needs
of the Sequence Read Archive (SRA). It is unique in that it builds
databases from smaller parts that can function independently as
_documents_, supports effective and efficient compression, supports
encryption while remaining encrypted on disk, transparent distribution
and remote access.
.
This package contains a runtime library for updating VDB data.
Package: libncbi-wvdb-dev
Architecture: amd64 arm64 x32
Multi-Arch: same
Section: libdevel
Depends: ${devlibs:Depends},
${misc:Depends},
libncbi-wvdb3 (= ${binary:Version})
Description: virtual layer update module of ncbi-vdb library (devel)
The (US) National Center for Biotechnology Information (NCBI)'s
Virtual/Vertical Database (VDB) is a highly compressed column-oriented
data warehousing technology developed initially to address the needs
of the Sequence Read Archive (SRA). It is unique in that it builds
databases from smaller parts that can function independently as
_documents_, supports effective and efficient compression, supports
encryption while remaining encrypted on disk, transparent distribution
and remote access.
.
This package contains development files for updating VDB data.
Package: libsam-extract3
Architecture: amd64 arm64 x32
Multi-Arch: same
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends}
Description: SAM extraction module of ncbi-vdb library
The (US) National Center for Biotechnology Information (NCBI)'s
Virtual/Vertical Database (VDB) is a highly compressed column-oriented
data warehousing technology developed initially to address the needs
of the Sequence Read Archive (SRA). It is unique in that it builds
databases from smaller parts that can function independently as
_documents_, supports effective and efficient compression, supports
encryption while remaining encrypted on disk, transparent distribution
and remote access.
.
This library is part of the ncbi-vdb package and provides an interface
for extracting Sequence/Alignment Map (SAM) files.
Package: libsam-extract-dev
Architecture: amd64 arm64 x32
Multi-Arch: same
Section: libdevel
Depends: ${devlibs:Depends},
${misc:Depends},
libsam-extract3 (= ${binary:Version})
Description: SAM extraction module of ncbi-vdb library (devel)
The (US) National Center for Biotechnology Information (NCBI)'s
Virtual/Vertical Database (VDB) is a highly compressed column-oriented
data warehousing technology developed initially to address the needs
of the Sequence Read Archive (SRA). It is unique in that it builds
databases from smaller parts that can function independently as
_documents_, supports effective and efficient compression, supports
encryption while remaining encrypted on disk, transparent distribution
and remote access.
.
This library is part of the ncbi-vdb package and provides development
files for extracting Sequence/Alignment Map (SAM) files.
|
