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Source: oscar4
Section: science
Priority: optional
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders:
Andrius Merkys <merkys@debian.org>,
Build-Depends:
debhelper-compat (= 13),
default-jdk,
emboss-data,
junit4,
libautomaton-java,
libcommons-math-java,
libicu4j-java,
libjregex-java,
liblog4j2-java,
libmaven-enforcer-plugin-java,
libmockito-java,
libopennlp-maxent-java,
libopsin-java (>= 2.8.0-2),
libxom-java,
maven-debian-helper,
Standards-Version: 4.6.0
Homepage: https://github.com/blueobelisk/oscar4
Vcs-Browser: https://salsa.debian.org/debichem-team/oscar4
Vcs-Git: https://salsa.debian.org/debichem-team/oscar4.git
Rules-Requires-Root: no
Package: liboscar4-java
Architecture: all
Depends:
${maven:Depends},
${misc:Depends},
Description: automated annotation of chemistry in scientific articles
OSCAR (Open Source Chemistry Analysis Routines) is an open source extensible
system for the automated annotation of chemistry in scientific articles. It can
be used to identify chemical names, reaction names, ontology terms, enzymes and
chemical prefixes and adjectives, and chemical data such as state, yield, IR,
NMR and mass spectra and elemental analyses. In addition, where possible, any
chemical names detected will be annotated with structures derived either by
lookup, or name-to-structure parsing using OPSIN or with identifiers from the
ChEBI (Chemical Entities of Biological Interest) ontology.
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