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Source: python-pyspoa
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Nilesh Patra <nilesh@debian.org>,
Testsuite: autopkgtest-pkg-python
Build-Depends:
debhelper-compat (= 13),
dh-sequence-python3,
python3-all-dev,
python3-setuptools,
libspoa-dev,
python3-pybind11
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-pyspoa
Vcs-Git: https://salsa.debian.org/med-team/python-pyspoa.git
Homepage: https://github.com/nanoporetech/pyspoa
Rules-Requires-Root: no
Package: python3-pyspoa
Architecture: any
Depends:
${python3:Depends},
${misc:Depends},
${shlibs:Depends},
Description: Python bindings to spoa
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
.
This package presents Python bindings for the spoa library
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