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Source: r-bioc-pwalign
Section: gnu-r
Priority: optional
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Michael R. Crusoe <crusoe@debian.org>
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-pwalign
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-pwalign.git
Homepage: https://bioconductor.org/packages/pwalign
Standards-Version: 4.7.0
Rules-Requires-Root: no
Build-Depends: debhelper-compat (= 13),
dh-r,
r-base-dev,
r-bioc-biocgenerics,
r-bioc-s4vectors,
r-bioc-iranges,
r-bioc-biostrings (>= 2.71.5),
r-bioc-xvector,
architecture-is-64-bit
Testsuite: autopkgtest-pkg-r
Package: r-bioc-pwalign
Architecture: any
Depends: ${R:Depends},
${shlibs:Depends},
${misc:Depends}
Recommends: ${R:Recommends}
Suggests: ${R:Suggests}
Description: Perform pairwise sequence alignments
The two main functions in the package are pairwiseAlignment() and
stringDist(). The former solves (Needleman-Wunsch) global alignment,
(Smith-Waterman) local alignment, and (ends-free) overlap alignment
problems. The latter computes the Levenshtein edit distance or pairwise
alignment score matrix for a set of strings.
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