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Source: svim
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders:
Nilesh Patra <nilesh@debian.org>,
Build-Depends:
debhelper-compat (= 13),
dh-python,
python3,
python3-edlib,
python3-matplotlib,
python3-numpy,
python3-pysam,
python3-scipy,
python3-pyspoa,
python3-cpuinfo,
python3-setuptools
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/med-team/svim
Vcs-Git: https://salsa.debian.org/med-team/svim.git
Homepage: https://github.com/eldariont/svim
Rules-Requires-Root: no
Package: svim
Architecture: all
Depends:
${misc:Depends},
${python3:Depends},
${shlibs:Depends},
Description: Structural variant caller for long sequencing reads
SVIM is a structural variant caller for long sequencing reads.
It is able to detect, classify and genotype five different
classes of structural variants. Unlike existing methods, SVIM
integrates information from across the genome to precisely
distinguish similar events, such as tandem and interspersed
duplications and simple insertions.
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