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Source: umis
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
cython3,
python3-dev,
python3-setuptools
Build-Depends-Arch: python3-pysam
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/umis
Vcs-Git: https://salsa.debian.org/med-team/umis.git
Homepage: https://github.com/vals/umis
Rules-Requires-Root: no
Package: umis
Architecture: any
Depends: ${shlibs:Depends},
${python3:Depends},
${misc:Depends},
python3-click,
python3-pysam,
python3-pandas,
python3-regex,
python3-scipy,
python3-toolz
Suggests: umis-examples
Description: tools for processing UMI RNA-tag data
Umis provides tools for estimating expression in RNA-Seq data which
performs sequencing of end tags of transcript, and incorporate molecular
tags to correct for amplification bias.
.
There are four steps in this process.
.
1. Formatting reads
2. Filtering noisy cellular barcodes
3. Pseudo-mapping to cDNAs
4. Counting molecular identifiers
Package: umis-examples
Architecture: all
Depends: ${shlibs:Depends},
${misc:Depends}
Recommends: umis
Multi-Arch: foreign
Description: tools for processing UMI RNA-tag data (examples)
Umis provides tools for estimating expression in RNA-Seq data which
performs sequencing of end tags of transcript, and incorporate molecular
tags to correct for amplification bias.
.
There are four steps in this process.
.
1. Formatting reads
2. Filtering noisy cellular barcodes
3. Pseudo-mapping to cDNAs
4. Counting molecular identifiers
.
Example and test files for umis.
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