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This package was downloaded from http://micans.org/mcl/src/
Files: *
Copyright: © 1999-2007 Stijn van Dongen <stijn@micans.org>
License: GPL-2
This program is free software; you can redistribute it and/or modify it
under the terms of version 2 of the GNU General Public License as published
by the Free Software Foundation. It should be shipped with MCL in the top
level directory as the file COPYING.
.
This program is distributed in the hope that it will be useful, but WITHOUT
ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for
more details.
.
If you use MCL software in your scientific research, please cite it
appropriately as you would cite a journal or a book. This includes papers
published in regular or electronic journals, usage of MCL as a back-end to a
database that is accessible via a web interface, or inclusion of MCL in a
larger framework of software that is distributed for other people for
scientific use. Include one of the following citations:
.
Stijn van Dongen, Graph Clustering by Flow Simulation.
PhD thesis, University of Utrecht, May 2000.
( http://www.library.uu.nl/digiarchief/dip/diss/1895620/inhoud.htm )
.
Stijn van Dongen. A cluster algorithm for graphs. Technical Report
INS-R0010, National Research Institute for Mathematics and Computer
Science in the Netherlands, Amsterdam, May 2000.
( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z )
.
and proper attributions to mcl's home http://micans.org/mcl/
and its author, Stijn van Dongen.
The publications listed above can be retrieved from the preceding URL.
.
If you are using some wrapper around mcl such as the blast module or the
tribe module, you are asked to act likewise.
.
For biological applications, it is appropriate to cite, additionally,
the reference article for the first application of mcl to biological data:
.
Enright A.J., Van Dongen S., Ouzounis C.A.
An efficient algorithm for large-scale detection of protein families,
Nucleic Acids Research 30(7):1575-1584 (2002).
Files: src/alien/oxygen/src/mcxdeblast
Copyright: © 2002-2005 Stijn van Dongen,
© 2004 Jason Stajich
License: GPL-2
Files: src/contrib/tribe/*
Copyright: © 2002 EMBL-EBI Anton Enright
License: GPL-2
Files: debian/*
Copyright: © 2001-2007 Joost van Baal <joostvb@debian.org>,
© 2007-2009 Philipp Benner <philipp@debian.org>
License: GPL-2+
The Debian packaging information is under the GPL, version 2 or later.
On Debian GNU/Linux systems, the complete text of the GNU General
Public License can be found in `/usr/share/common-licenses/GPL' and the
complete text of the GNU Lesser General Public License can be found in
`/usr/share/common-licenses/LGPL'.
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