Description: specifying paths on Debian system for some dependencies
 For those dependencies, no maven-repo tree is available, we are therefore
 giving their path with system scope.
Author: Pierre Gruet <pgt@debian.org>
Forwarded: not-needed
Last-Update: 2020-09-04

--- a/pom.xml
+++ b/pom.xml
@@ -232,6 +232,8 @@
 		    <groupId>org.emboss</groupId>
 		    <artifactId>jemboss</artifactId>
 		    <version>1.0</version>
+                    <scope>system</scope>
+                    <systemPath>/usr/share/EMBOSS/jemboss/lib/jemboss.jar</systemPath>
 		</dependency>
 		
 		<!--  Very out of date, but using the latest v3 will not compile atm -->
@@ -290,6 +292,8 @@
 		    <groupId>com.github.broadinstitute</groupId>
 		    <artifactId>picard</artifactId>
 		    <version>2.26.11</version>
+                    <scope>system</scope>
+                    <systemPath>/usr/share/java/picard.jar</systemPath>
 		</dependency>
 				
 		<!--  Testing only -->