From: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Date: Wed, 7 Nov 2012 18:44:06 -0700
Subject: ignore-thirdparty-and-fix-jsoncpp

---
 src/CMakeLists.txt              | 2 +-
 src/toolkit/CMakeLists.txt      | 1 -
 src/toolkit/bamtools_filter.cpp | 2 +-
 3 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index e359695..636bd62 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -6,7 +6,7 @@
 # ==========================
 
 add_subdirectory( api )
-add_subdirectory( third_party )
+#add_subdirectory( third_party )
 add_subdirectory( toolkit )
 add_subdirectory( utils )
 
diff --git a/src/toolkit/CMakeLists.txt b/src/toolkit/CMakeLists.txt
index c781148..d074870 100644
--- a/src/toolkit/CMakeLists.txt
+++ b/src/toolkit/CMakeLists.txt
@@ -8,7 +8,6 @@
 # set include path
 include_directories( ${BamTools_SOURCE_DIR}/src/api
                      ${BamTools_SOURCE_DIR}/src/utils
-                     ${BamTools_SOURCE_DIR}/src/third_party
                    )
 
 # compile main bamtools application
diff --git a/src/toolkit/bamtools_filter.cpp b/src/toolkit/bamtools_filter.cpp
index 2f17242..521e7c2 100644
--- a/src/toolkit/bamtools_filter.cpp
+++ b/src/toolkit/bamtools_filter.cpp
@@ -16,7 +16,7 @@
 #include <utils/bamtools_utilities.h>
 using namespace BamTools;
 
-#include <jsoncpp/json.h>
+#include <jsoncpp/json/json.h>
 using namespace Json;
 
 #include <cstdio>