Index of /data/main/b/bbmap/39.20+dfsg-2

• Parent Directory
• README.md
• Xcalcmem.sh
• a_sample_mt.sh
• addadapters.sh
• addssu.sh
• adjusthomopolymers.sh
• alltoall.sh
• analyzeaccession.sh
• analyzegenes.sh
• analyzesketchresults.sh
• applyvariants.sh
• bbcms.sh
• bbcountunique.sh
• bbcrisprfinder.sh
• bbduk.sh
• bbest.sh
• bbfakereads.sh
• bbmap.sh
• bbmapskimmer.sh
• bbmask.sh
• bbmerge-auto.sh
• bbmerge.sh
• bbnorm.sh
• bbrealign.sh
• bbrename.sh
• bbsketch.sh
• bbsort.sh
• bbsplit.sh
• bbsplitpairs.sh
• bbstats.sh
• bbversion.sh
• bbwrap.sh
• bitbucket-pipelines.yml
• bloomfilter.sh
• bloomfilterparser.sh
• build.xml
• calcmem.sh
• calctruequality.sh
• callgenes.sh
• callpeaks.sh
• callvariants.sh
• callvariants2.sh
• cat.sh
• cg2illumina.sh
• checkstrand.sh
• clumpify.sh
• commonkmers.sh
• comparegff.sh
• comparelabels.sh
• comparesketch.sh
• comparessu.sh
• comparevcf.sh
• config/
• consect.sh
• consensus.sh
• copyfile.sh
• countbarcodes.sh
• countbarcodes2.sh
• countduplicates.sh
• countgc.sh
• countsharedlines.sh
• crossblock.sh
• crosscontaminate.sh
• current/
• cutgff.sh
• cutprimers.sh
• debian/
• decontaminate.sh
• dedupe.sh
• dedupe2.sh
• dedupebymapping.sh
• demuxbyname.sh
• demuxserver.sh
• diskbench.sh
• docs/
• estherfilter.sh
• explodetree.sh
• fetchproks.sh
• filterassemblysummary.sh
• filterbarcodes.sh
• filterbycoverage.sh
• filterbyname.sh
• filterbysequence.sh
• filterbytaxa.sh
• filterbytile.sh
• filterlines.sh
• filterqc.sh
• filtersam.sh
• filtersilva.sh
• filtersubs.sh
• filtervcf.sh
• findrepeats.sh
• fixgaps.sh
• fungalrelease.sh
• fuse.sh
• gbff2gff.sh
• getreads.sh
• gi2ancestors.sh
• gi2taxid.sh
• gitable.sh
• gradebins.sh
• grademerge.sh
• gradesam.sh
• icecreamfinder.sh
• icecreamgrader.sh
• icecreammaker.sh
• idmatrix.sh
• idtree.sh
• invertkey.sh
• jni/
• kapastats.sh
• kcompress.sh
• keepbestcopy.sh
• khist.sh
• kmercountexact.sh
• kmercountmulti.sh
• kmercoverage.sh
• kmerfilterset.sh
• kmerlimit.sh
• kmerlimit2.sh
• kmerposition.sh
• kmutate.sh
• license.txt
• lilypad.sh
• loadreads.sh
• loglog.sh
• makechimeras.sh
• makecontaminatedgenomes.sh
• makepolymers.sh
• makequickbinvector.sh
• mapPacBio.sh
• matrixtocolumns.sh
• mergeOTUs.sh
• mergebarcodes.sh
• mergepgm.sh
• mergeribo.sh
• mergesam.sh
• mergesketch.sh
• mergesorted.sh
• microalign.sh
• msa.sh
• mutate.sh
• muxbyname.sh
• netfilter.sh
• novademux.sh
• partition.sh
• phylip2fasta.sh
• picksubset.sh
• pileup.sh
• pileup2.sh
• pipelines/
• plotflowcell.sh
• plotgc.sh
• plothist.sh
• plotreadposition.sh
• polyfilter.sh
• postfilter.sh
• printtime.sh
• processfrag.sh
• processhi-c.sh
• processspeed.sh
• pytools/
• quickbin.sh
• randomgenome.sh
• randomreads.sh
• randomreadsmg.sh
• readlength.sh
• readqc.sh
• reducecolumns.sh
• reducesilva.sh
• reformat.sh
• reformatpb.sh
• removebadbarcodes.sh
• removecatdogmousehuman.sh
• removehuman.sh
• removehuman2.sh
• removemicrobes.sh
• removesmartbell.sh
• rename.sh
• renamebymapping.sh
• renamebysketch.sh
• renameimg.sh
• repair.sh
• replaceheaders.sh
• representative.sh
• resources/
• rqcfilter.sh
• rqcfilter2.sh
• runhmm.sh
• samtoroc.sh
• scoresequence.sh
• seal.sh
• sendsketch.sh
• seqtovec.sh
• shred.sh
• shrinkaccession.sh
• shuffle.sh
• shuffle2.sh
• sketch.sh
• sketchblacklist.sh
• sketchblacklist2.sh
• sortbyname.sh
• splitbytaxa.sh
• splitnextera.sh
• splitribo.sh
• splitsam.sh
• splitsam4way.sh
• splitsam6way.sh
• stats.sh
• stats3.sh
• statswrapper.sh
• streamsam.sh
• subsketch.sh
• summarizecontam.sh
• summarizecoverage.sh
• summarizecrossblock.sh
• summarizemerge.sh
• summarizequast.sh
• summarizescafstats.sh
• summarizeseal.sh
• summarizesketch.sh
• synthmda.sh
• tadpipe.sh
• tadpole.sh
• tadwrapper.sh
• tagandmerge.sh
• taxonomy.sh
• taxserver.sh
• taxsize.sh
• taxtree.sh
• testfilesystem.sh
• testformat.sh
• testformat2.sh
• tetramerfreq.sh
• textfile.sh
• tiledump.sh
• train.sh
• translate6frames.sh
• trimcontigs.sh
• unicode2ascii.sh
• unzip.sh
• vcf2gff.sh
• webcheck.sh