Index of /data/main/b/bbmap/39.20+dfsg-2/current/jgi

• Parent Directory
• AddAdapters.java
• AdjustHomopolymers.java
• Assembly.java
• AssemblyStats2.java
• AssemblyStats3.java
• AssemblyStatsWrapper.java
• BBDuk.java
• BBMask.java
• BBMerge.java
• BBMergeOverlapper.java
• BBQC.java
• CalcTrueQuality.java
• CalcUniqueness.java
• CallPeaks.java
• CheckStrand.java
• CheckStrand2.java
• Consect.java
• CountDuplicates.java
• CountDuplicatesBuffered.java
• CountGC.java
• CountUniqueness.java
• CovStatsLine.java
• CoveragePileup.java
• CoveragePileupMT.java
• CrisprFinder.java
• CrossContaminate.java
• CutPrimers.java
• DecontaminateByNormalization.java
• Dedupe.java
• Dedupe2.java
• DedupeByMapping.java
• DedupeProtein.java
• DemuxByName.java
• DemuxByName2.java
• Difference.java
• FakeReads.java
• FilterByCoverage.java
• FilterBySequence.java
• FilterReadsWithSubs.java
• FindHiCJunctions.java
• FindPrimers.java
• FindPrimers_old.java
• FindString.java
• FungalRelease.java
• FuseSequence.java
• GatherKapaStats.java
• GetReads.java
• GradeMergedReads.java
• GreedyBarCodeFinder.java
• IdentityMatrix.java
• Info.java
• KExpand.java
• KeepBestCopy.java
• KmerCountExact.java
• KmerCountMulti.java
• KmerCoverage.java
• KmerFilterSetMaker.java
• KmerNormalize.java
• KmerSample.java
• MakeChimeras.java
• MakeContaminatedGenomes.java
• MakeLengthHistogram.java
• MakePolymers.java
• MergeBarcodes.java
• MergeSam.java
• MutateGenome.java
• MutateGenome2.java
• Orf.java
• PartitionReads.java
• PhylipToFasta.java
• PickSubset.java
• RQCFilter2.java
• RQCFilterStats.java
• RandomGenome.java
• ReadKmerDepthDistribution.java
• RedirectTest.java
• ReformatReads.java
• RemapQuality.java
• RemoveBadBarcodes.java
• RenameReads.java
• ReplaceHeaders.java
• RepresentativeSet.java
• SamToEst.java
• Seal.java
• SealRefInfo.java
• Shred.java
• SmallKmerFrequency.java
• SplitNexteraLMP.java
• SplitPairsAndSingles.java
• SplitSam4Way.java
• SplitSam6Way.java
• SplitSamFile.java
• SynthMDA.java
• TestFilesystem.java
• TestFormat.java
• TetramerFrequencies.java
• TranslateSixFrames.java
• TrimContigs.java
• UnicodeToAscii.java
• Unzip.java