Index of /data/main/b/bcftools/1.11-1/test

• Parent Directory
• 23andme.fa
• 23andme.fa.fai
• aa.2.out
• aa.fa
• aa.fa.fai
• aa.hdr
• aa.out
• aa.vcf
• ad-bias.2.out
• ad-bias.2.vcf
• ad-bias.out
• ad-bias.samples
• ad-bias.vcf
• af-dist.out
• af-dist.vcf
• annotate.hdr
• annotate.multi.1.out
• annotate.multi.tab
• annotate.multi.vcf
• annotate.out
• annotate.tab
• annotate.vcf
• annotate2.out
• annotate2.tab
• annotate2.vcf
• annotate3.out
• annotate3.vcf
• annotate4.hdr
• annotate4.out
• annotate4.vcf
• annotate5.out
• annotate6.out
• annotate7.out
• annotate8.out
• annotate9.out
• annotate9.vcf
• annotate10.hdr
• annotate10.out
• annotate10.vcf
• annotate11.out
• annotate11.vcf
• annotate12.out
• annotate12.vcf
• annotate13.hdr
• annotate13.out
• annotate13.vcf
• annotate14.out
• annotate14.vcf
• annotate15.hdr
• annotate15.out
• annotate15.tab
• annotate15.vcf
• annotate16.out
• annotate16.vcf
• annotate17.1.out
• annotate17.1.tab
• annotate17.1.vcf
• annotate17.2.out
• annotate17.2.vcf
• annotate17.3.out
• annotate17.3.tab
• annotate17.3.vcf
• annotate17.out
• annotate18.1.out
• annotate18.1.tab
• annotate18.1.vcf
• annotate18.2.out
• annotate18.2.tab
• annotate18.2.vcf
• annotate18.out
• annotate19.1.out
• annotate19.2.out
• annotate19.dst.vcf
• annotate19.out
• annotate19.src.vcf
• annotate20.1.out
• annotate20.2.out
• annotate20.3.out
• annotate20.dst.vcf
• annotate20.out
• annotate20.src.vcf
• annotate21.out
• annotate22.out
• annotate23.out
• annotate24.out
• annotate25.out
• annotate26.out
• annotate27.out
• annotate28.out
• annots.vcf
• annots2.vcf
• annots4.tab
• annots4.vcf
• annots9.tab
• annots9.vcf
• annots10.tab
• annots11.tab
• annots11.vcf
• annots12.vcf
• annots13.tab
• check.chk
• check.gs.chrom.gen
• check.gs.chrom.samples
• check.gs.vcfids.gen
• check.gs.vcfids.samples
• check.gs.vcfids_chrom.gen
• check.gs.vcfids_chrom.samples
• check.vcf
• check_merge.chk
• concat.1.a.vcf
• concat.1.b.vcf
• concat.1.bcf.out
• concat.1.vcf.out
• concat.2.a.vcf
• concat.2.b.vcf
• concat.2.bcf.out
• concat.2.vcf.out
• concat.3.0.vcf
• concat.3.a.vcf
• concat.3.b.vcf
• concat.3.bcf.out
• concat.3.c.vcf
• concat.3.d.vcf
• concat.3.e.vcf
• concat.3.f.vcf
• concat.3.vcf.out
• concat.4.bcf.out
• concat.4.vcf.out
• consensus.1.chain
• consensus.1.out
• consensus.2.chain
• consensus.2.out
• consensus.3.chain
• consensus.3.out
• consensus.4.chain
• consensus.4.out
• consensus.5.out
• consensus.8a.out
• consensus.8b.out
• consensus.8c.out
• consensus.8d.out
• consensus.8e.out
• consensus.8f.out
• consensus.9.1.fa
• consensus.9.1.out
• consensus.9.2.fa
• consensus.9.2.out
• consensus.9.vcf
• consensus.10.vcf
• consensus.11.1.out
• consensus.11.2.out
• consensus.11.fa
• consensus.11.vcf
• consensus.12.fa
• consensus.12.out
• consensus.12.vcf
• consensus.13.fa
• consensus.13.out
• consensus.13.vcf
• consensus.fa
• consensus.tab
• consensus.vcf
• consensus2.1.out
• consensus2.2.out
• consensus2.fa
• consensus2.vcf
• consensus3.2.out
• consensus3.out
• consensus3.vcf
• consensus4.out
• consensus4.vcf
• consensus5.fa
• consensus5.out
• consensus5.vcf
• consensus6.fa
• consensus6.out
• consensus6.vcf
• consensus7.fa
• consensus7.vcf
• consensus7a.out
• consensus7b.out
• consensus7c.out
• consensus7d.out
• consensus8.vcf
• contrast.out
• contrast.vcf
• contrast0.txt
• contrast1.txt
• convert.23andme
• convert.23andme.vcf
• convert.gs.gt.gen
• convert.gs.gt.samples
• convert.gs.pl.gen
• convert.gs.pl.samples
• convert.gt.noHead.ids.vcf
• convert.gt.noHead.vcf
• convert.gt.vcf
• convert.gvcf.out
• convert.gvcf.vcf
• convert.hap-missing.haps
• convert.hap-missing.vcf
• convert.hls.gt.hap
• convert.hls.gt.legend
• convert.hls.gt.samples
• convert.hls.haps
• convert.hls.legend
• convert.hls.samples
• convert.hs.gt.hap
• convert.hs.gt.samples
• convert.hs.hap
• convert.hs.sample
• convert.vcf
• create-bam-test
• csq.1.out
• csq.fa
• csq.fa.fai
• csq.gff3
• csq.vcf
• csq/
• dosage.1.out
• dosage.2.out
• dosage.3.out
• dosage.vcf
• empty.idx.out
• empty.idx_count.out
• empty.vcf
• ex1.gtf.gz
• ex2.vcf
• ex3.sam
• fill-AN-AC.out
• fill-tags-AN0.out
• fill-tags-AN0.vcf
• fill-tags-hemi.1.out
• fill-tags-hemi.2.out
• fill-tags-hemi.vcf
• fill-tags-hwe.out
• fill-tags-hwe.vcf
• fill-tags.2.out
• fill-tags.3.out
• fill-tags.3.smpl
• fill-tags.4.out
• fill-tags.5.out
• fill-tags.out
• filter-missing-floats.vcf
• filter.1.out
• filter.1.vcf
• filter.2.out
• filter.2.vcf
• filter.3.out
• filter.3.vcf
• filter.4.out
• filter.4.vcf
• filter.5.out
• filter.5.vcf
• filter.6.out
• filter.6.vcf
• filter.7.out
• filter.7.vcf
• filter.8.out
• filter.8.vcf
• filter.9.out
• filter.9.vcf
• filter.10.out
• filter.10.vcf
• filter.11.out
• filter.11.vcf
• filter.12.out
• filter.13.out
• filter.14.out
• filter.15.out
• filter.16.out
• filter.17.out
• filter.18.out
• filter.19.out
• filter.20.out
• filter.21.out
• filter.22.out
• filter.23.out
• filter.24.out
• filter.25.out
• filter.26.out
• filter.27.out
• filter.28.out
• filter.29.out
• filter.30.out
• filter.31.out
• filter.32.out
• filter.33.out
• filter.34.out
• filter.35.out
• filter.36.out
• filter.37.out
• filter.38.out
• filter.39.out
• fixploidy.out
• fixploidy.ploidy
• fixploidy.samples
• fixploidy.vcf
• fixref.1.out
• fixref.2.out
• fixref.2a.vcf
• fixref.2b.vcf
• fixref.3.fa
• fixref.3.fa.fai
• fixref.3.out
• fixref.3.vcf
• fixref.4.out
• fixref.5.out
• fixref.vcf
• gtcheck.1.gts.vcf
• gtcheck.1.out
• gtcheck.1.vcf
• gtcheck.2.out
• gtcheck.2.vcf
• gtcheck.3.out
• gtcheck.3.pairs
• gtcheck.3.vcf
• gtcheck.4.out
• gtcheck.4.pairs
• gtcheck.4.vcf
• gtcheck.5.out
• gtcheck.6.out
• gtcheck.7.out
• gtcheck.8.out
• gtcheck.9.out
• gtcheck.10.out
• gtcheck.11.out
• gtcheck.12.out
• guess-ploidy.GL.out
• guess-ploidy.PL.out
• gvcf.fa
• gvcf.fa.fai
• gvcf.merge.1.out
• gvcf.merge.1.vcf
• gvcf.merge.2.vcf
• gvcf.merge.3.vcf
• gvcfz.1.out
• gvcfz.2.1.out
• gvcfz.2.out
• gvcfz.2.vcf
• gvcfz.vcf
• idx.1.out
• idx.1.vcf
• idx.2.bed
• idx.2.out
• idx.2.vcf
• idx.3.bed
• idx.3.out
• idx.3.vcf
• idx.4.bed
• idx.4.out
• idx.4.vcf
• idx.out
• idx.vcf
• idx_count.out
• indel-stats.1.out
• indel-stats.2.out
• indel-stats.3.out
• indel-stats.vcf
• isec-miss.1.1.out
• isec-miss.1.1.vcf
• isec-miss.1.2.vcf
• isec-miss.1.3.vcf
• isec-miss.1.regs.txt
• isec-miss.2.1.out
• isec-miss.2.1.vcf
• isec-miss.2.2.vcf
• isec-miss.2.3.vcf
• isec.a.vcf
• isec.ab.C.out
• isec.ab.any.out
• isec.ab.both.out
• isec.ab.flt.out
• isec.ab.out
• isec.b.vcf
• isec.tab
• isec.tab.out
• large_chrom.20.1.2147483647.out
• large_chrom_csi_limit.20.1.2147483647.out
• large_chrom_csi_limit.vcf
• many-alts.vcf
• many.alleles.trim.out
• many.alleles.vcf
• mendelian.1.out
• mendelian.2.out
• mendelian.3.out
• mendelian.4.out
• mendelian.5.out
• mendelian.vcf
• merge.2.a.vcf
• merge.2.all.out
• merge.2.b.vcf
• merge.2.both.out
• merge.2.none.out
• merge.3.a.vcf
• merge.3.b.vcf
• merge.3.out
• merge.4.a.vcf
• merge.4.b.vcf
• merge.4.out
• merge.5.a.vcf
• merge.5.b.vcf
• merge.5.out
• merge.6.a.vcf
• merge.6.b.vcf
• merge.6.out
• merge.7.a.vcf
• merge.7.b.vcf
• merge.9.out
• merge.LPL.1.out
• merge.LPL.2.out
• merge.LPL.3.out
• merge.LPL.4.out
• merge.LPL.5.out
• merge.LPL.6.out
• merge.LPL.a.vcf
• merge.LPL.b.vcf
• merge.LPL.c.vcf
• merge.a.chk
• merge.a.vcf
• merge.abc.2.out
• merge.abc.3.out
• merge.abc.out
• merge.b.vcf
• merge.c.vcf
• merge.gvcf.2.a.vcf
• merge.gvcf.2.b.vcf
• merge.gvcf.2.c.vcf
• merge.gvcf.2.out
• merge.gvcf.3.a.vcf
• merge.gvcf.3.b.vcf
• merge.gvcf.3.out
• merge.gvcf.4.a.vcf
• merge.gvcf.4.b.vcf
• merge.gvcf.4.out
• merge.gvcf.7.a.vcf
• merge.gvcf.7.b.vcf
• merge.gvcf.7.out
• merge.gvcf.8.a.vcf
• merge.gvcf.8.b.vcf
• merge.gvcf.8.out
• merge.gvcf.9.1.out
• merge.gvcf.9.2.out
• merge.gvcf.9.3.out
• merge.gvcf.9.4.out
• merge.gvcf.9a.vcf
• merge.gvcf.9b.vcf
• merge.gvcf.9c.vcf
• merge.gvcf.9d.vcf
• merge.gvcf.9e.vcf
• merge.gvcf.10.1.out
• merge.gvcf.10.2.out
• merge.gvcf.10.3.out
• merge.gvcf.10.4.out
• merge.gvcf.10.5.out
• merge.gvcf.10.a.vcf
• merge.gvcf.10.b.vcf
• merge.gvcf.10.fa
• merge.gvcf.10.fa.fai
• merge.gvcf.10.ref
• merge.join.1.out
• merge.join.a.vcf
• merge.join.b.vcf
• merge.noidx.a.vcf
• merge.noidx.abc.out
• merge.noidx.b.vcf
• merge.noidx.c.vcf
• missing.vcf
• missing2ref.out
• mpileup.1.out
• mpileup.2.out
• mpileup.2.samples
• mpileup.2.tab
• mpileup.2.vcf
• mpileup.3.out
• mpileup.3.samples
• mpileup.3.tab
• mpileup.3.vcf
• mpileup.4.out
• mpileup.4.samples
• mpileup.4.tab
• mpileup.4.vcf
• mpileup.5.out
• mpileup.5.samples
• mpileup.5.tab
• mpileup.5.vcf
• mpileup.6.tab
• mpileup.7.tab
• mpileup.NA19213.NA19129.vcf
• mpileup.X.2.out
• mpileup.X.out
• mpileup.X.vcf
• mpileup.c.1.out
• mpileup.c.X.2.out
• mpileup.c.X.out
• mpileup.c.X.vcf
• mpileup.c.vcf
• mpileup.cAls.2.out
• mpileup.cAls.3.out
• mpileup.cAls.4.out
• mpileup.cAls.5.out
• mpileup.cAls.6.out
• mpileup.cAls.7.out
• mpileup.cAls.out
• mpileup.cals.1.tab
• mpileup.cals.1.vcf
• mpileup.cals.2.tab
• mpileup.cals.2.vcf
• mpileup.cals.8.out
• mpileup.cals.9.out
• mpileup.hwe.1.out
• mpileup.hwe.2.out
• mpileup.hwe.3.out
• mpileup.hwe.4.out
• mpileup.hwe.samples
• mpileup.hwe.vcf
• mpileup.ped
• mpileup.ploidy
• mpileup.samples
• mpileup.tab
• mpileup.vcf
• mpileup/
• mplp.9.samples
• mplp.10.samples
• mplp.11.rgs
• mplp.samples
• norm.2.fa
• norm.2.fa.fai
• norm.2.out
• norm.2.vcf
• norm.3.fa
• norm.3.out
• norm.3.vcf
• norm.fa
• norm.fa.fai
• norm.iupac.fa
• norm.iupac.fa.fai
• norm.iupac.out
• norm.iupac.vcf
• norm.merge.2.out
• norm.merge.2.vcf
• norm.merge.3.out
• norm.merge.3.vcf
• norm.merge.out
• norm.merge.strict.out
• norm.merge.vcf
• norm.out
• norm.rmdup.1.out
• norm.rmdup.2.1.out
• norm.rmdup.2.2.out
• norm.rmdup.2.out
• norm.rmdup.2.vcf
• norm.rmdup.3.out
• norm.rmdup.4.out
• norm.rmdup.5.out
• norm.rmdup.vcf
• norm.setref.out
• norm.setref.vcf
• norm.split.2.out
• norm.split.2.vcf
• norm.split.3.out
• norm.split.3.vcf
• norm.split.4.1.out
• norm.split.4.2.out
• norm.split.4.vcf
• norm.split.and.norm.out
• norm.split.out
• norm.split.vcf
• norm.telomere.out
• norm.telomere.vcf
• norm.vcf
• parental-origin.1.out
• parental-origin.2.out
• parental-origin.3.out
• parental-origin.4.out
• parental-origin.5.out
• parental-origin.vcf
• perl-flt.vcf
• plugin-missing2ref.out.vcf
• plugin-missing2ref.vcf
• plugin1.vcf
• prune.1.1.out
• prune.1.2.out
• prune.1.3.out
• prune.1.4.out
• prune.1.5.out
• prune.1.vcf
• prune.2.1.out
• prune.2.vcf
• query.2.out
• query.2.vcf
• query.3.out
• query.4.out
• query.5.out
• query.6.out
• query.7.out
• query.8.out
• query.9.out
• query.10.out
• query.11.out
• query.12.out
• query.13.out
• query.14.out
• query.15.out
• query.16.out
• query.17.out
• query.18.out
• query.19.out
• query.20.out
• query.21.out
• query.22.out
• query.23.out
• query.24.out
• query.25.out
• query.26.out
• query.27.out
• query.28.out
• query.29.out
• query.30.out
• query.31.out
• query.32.out
• query.33.out
• query.34.out
• query.35.out
• query.36.out
• query.37.out
• query.38.out
• query.39.out
• query.40.out
• query.41.out
• query.42.out
• query.43.out
• query.44.out
• query.45.out
• query.46.out
• query.47.out
• query.48.out
• query.49.out
• query.50.out
• query.51.out
• query.52.out
• query.53.out
• query.54.out
• query.55.out
• query.56.out
• query.57.out
• query.58.out
• query.59.out
• query.60.out
• query.61.out
• query.62.out
• query.63.out
• query.64.out
• query.65.out
• query.66.out
• query.67.out
• query.68.out
• query.69.out
• query.70.out
• query.71.out
• query.72.out
• query.73.out
• query.74.out
• query.75.out
• query.76.out
• query.77.out
• query.78.out
• query.79.out
• query.add-variantkey.vcf
• query.allele-length.tsv
• query.filter-type.vcf
• query.filter.2.vcf
• query.filter.3.vcf
• query.filter.4.vcf
• query.filter.5.vcf
• query.filter.6.vcf
• query.filter.7.vcf
• query.filter.8.vcf
• query.filter.9.vcf
• query.filter.10.vcf
• query.filter.vcf
• query.negative.vcf
• query.nucleotide.vcf
• query.out
• query.pbinom.1.vcf
• query.string.1.out
• query.string.2.out
• query.string.vcf
• query.variantkey.hex.out
• query.variantkey.vcf
• query.vcf
• ref.out
• ref.vcf
• regions.out
• regions.tab
• regions.vcf
• reheader.1.out
• reheader.1.out.bcf
• reheader.2.hdr
• reheader.2.out
• reheader.2.vcf
• reheader.3.out
• reheader.4.out
• reheader.5.out
• reheader.empty.hdr
• reheader.empty.out
• reheader.fai
• reheader.hdr
• reheader.samples
• reheader.samples2
• reheader.samples3
• reheader.samples4
• reheader.vcf
• remove-overlaps.1.out
• remove-overlaps.2.out
• remove-overlaps.vcf
• roh.1.1.out
• roh.1.2.out
• roh.1.3.out
• roh.1.4.out
• roh.1.tab.gz
• roh.1.tab.gz.tbi
• roh.1.vcf.gz
• roh.1.vcf.gz.csi
• scatter.1.1.out
• scatter.1.2.out
• scatter.1.3.out
• scatter.1.vcf
• setGT.1.out
• setGT.2.out
• setGT.2.vcf
• setGT.3.out
• setGT.samples.txt
• setGT.vcf
• smpl-stats.1.out
• sort.out
• sort.vcf
• split-vep.1.out
• split-vep.2.out
• split-vep.2.vcf
• split-vep.3.out
• split-vep.3.vcf
• split-vep.4.out
• split-vep.4.vcf
• split-vep.5.out
• split-vep.5.vcf
• split-vep.6.out
• split-vep.6.vcf
• split-vep.7.out
• split-vep.8.out
• split-vep.9.out
• split-vep.10.out
• split-vep.11.out
• split-vep.12.out
• split-vep.13.out
• split-vep.14.out
• split-vep.15.out
• split-vep.16.out
• split-vep.17.out
• split-vep.18.out
• split-vep.19.out
• split-vep.vcf
• split.1.1.out
• split.1.2.out
• split.1.3.out
• split.1.4.out
• split.1.5.out
• split.1.7.out
• split.1.vcf
• split.grp.1.1.txt
• split.smpl.1.2.txt
• split.smpl.1.3.txt
• split.smpl.1.4.txt
• stats.B.chk
• stats.a.vcf
• stats.b.vcf
• stats.chk
• stats.counts.chk
• stats.counts.vcf
• tabix.1.3000151.out
• tabix.2.3199812.out
• test-rbuf.c
• test-regidx.c
• test.pl
• trio-dnm.1.out
• trio-dnm.1.vcf
• trio-dnm.2.out
• trio-dnm.2.vcf
• trio-stats.2.out
• trio-stats.2.ped
• trio-stats.out
• trio-stats.ped
• trio-stats.vcf
• trio.out
• trio.ped
• trio.vcf
• variantkey-hex.out
• vcf2sex.out
• vcf2sex.vcf
• view.1.out
• view.2.out
• view.3.out
• view.4.out
• view.5.out
• view.6.out
• view.7.out
• view.8.out
• view.9.out
• view.10.out
• view.GL.vcf
• view.GP.vcf
• view.GT.vcf
• view.GTisec.H.out
• view.GTisec.Hm.out
• view.GTisec.Hmv.out
• view.GTisec.Hv.out
• view.GTisec.m.out
• view.GTisec.mv.out
• view.GTisec.out
• view.GTisec.v.out
• view.GTsubset.NA1.out
• view.GTsubset.NA1NA2.out
• view.GTsubset.NA1NA2NA3.out
• view.PL.vcf
• view.chrs.out
• view.chrs.tab
• view.chrs.vcf
• view.dropgenotypes.noheader.out
• view.dropgenotypes.out
• view.exclude.out
• view.filter.1.out
• view.filter.2.out
• view.filter.2.vcf
• view.filter.3.out
• view.filter.4.out
• view.filter.5.out
• view.filter.6.out
• view.filter.7.out
• view.filter.8.out
• view.filter.9.out
• view.filter.10.out
• view.filter.11.out
• view.filter.12.out
• view.filter.annovar.1.out
• view.filter.annovar.2.out
• view.filter.annovar.3.out
• view.filter.annovar.vcf
• view.filter.vcf
• view.minmaxac.1.out
• view.minmaxac.2.out
• view.minmaxac.vcf
• view.omitgenotypes.out
• view.omitgenotypes.vcf
• view.vcf
• view.vectors.2.vcf
• view.vectors.A.out
• view.vectors.B.out
• view.vectors.C.out
• view.vectors.vcf
• view64bit.1.out
• view64bit.1.vcf
• view64bit.2.out
• view64bit.2.vcf
• view64bit.3.out
• view64bit.3.vcf
• view64bit.4.out
• view64bit.4.vcf
• view64bit.5.out
• view64bit.5.vcf