Author: Andreas Tille <tille@debian.org>
Last-Update: Thu, 16 Jan 2020 08:52:43 +0100
Bug-Debian: https://bugs.debian.org/948926
Description: Add some missing libraries to linker

--- a/meson.build
+++ b/meson.build
@@ -51,10 +51,10 @@ blasr_thread_dep = dependency('threads',
 blasr_boost_dep = dependency('boost', include_type : 'system', required : true)
 
 # pbbam
-blasr_pbbam_dep = dependency('pbbam', fallback : ['pbbam', 'pbbam_dep'])
+blasr_pbbam_dep = cpp.find_library('pbbam')
 
 # libblasr
-blasr_libblasr_dep = dependency('libblasr', fallback : ['blasr_libcpp', 'libblasr_dep'])
+blasr_libblasr_dep = dependency('libblasr', required : true)
 
 # zlib
 blasr_zlib_dep = dependency('zlib', required : true, fallback : ['zlib', 'zlib_dep'])
@@ -62,11 +62,15 @@ blasr_zlib_dep = dependency('zlib', requ
 # htslib
 blasr_htslib_dep = dependency('htslib', required : true, version : '>=1.4', fallback : ['htslib', 'htslib_dep'])
 
+# missing libs for linker
+blasr_pbcopper_deps = cpp.find_library('pbcopper')
+
 blasr_deps = [
   blasr_thread_dep,
   blasr_boost_dep,
   blasr_pbbam_dep,
   blasr_libblasr_dep,
+  blasr_pbcopper_deps,
   blasr_zlib_dep,
   blasr_htslib_dep]
 
@@ -110,7 +114,7 @@ blasr_static_impl = static_library(
   blasr_sources,
   install : false,
   dependencies : blasr_deps,
-  cpp_args : [blasr_warning_flags, '-DUSE_PBBAM=1'])
+  cpp_args : [blasr_warning_flags])
 
 blasr_main = executable(
   'blasr', [
@@ -120,7 +124,7 @@ blasr_main = executable(
   install : true,
   dependencies : blasr_deps,
   link_with : blasr_static_impl,
-  cpp_args : [blasr_warning_flags, '-DUSE_PBBAM=1', '-DCMAKE_BUILD=1'])
+  cpp_args : [blasr_warning_flags, '-DCMAKE_BUILD=1'])
 
 blasr_utils_sawriter = executable(
   'sawriter', files([
@@ -128,7 +132,7 @@ blasr_utils_sawriter = executable(
   install : true,
   dependencies : blasr_deps,
   link_with : blasr_static_impl,
-  cpp_args : [blasr_warning_flags, '-DUSE_PBBAM=1', '-DCMAKE_BUILD=1'])
+  cpp_args : [blasr_warning_flags, '-DCMAKE_BUILD=1'])
 
 blasr_utils_toAfg = executable(
   'toAfg', files([
@@ -136,7 +140,7 @@ blasr_utils_toAfg = executable(
   install : false,
   dependencies : blasr_deps,
   link_with : blasr_static_impl,
-  cpp_args : [blasr_warning_flags, '-DUSE_PBBAM=1', '-DCMAKE_BUILD=1'])
+  cpp_args : [blasr_warning_flags, '-DCMAKE_BUILD=1'])
 
 #########
 # tests #