Index of /data/main/b/bowtie/1.1.2-6

• Parent Directory
• AUTHORS
• LICENSE
• MANUAL
• MANUAL.markdown
• Makefile
• NEWS
• TUTORIAL
• VERSION
• aligner.h
• aligner_0mm.h
• aligner_1mm.h
• aligner_23mm.h
• aligner_metrics.h
• aligner_seed_mm.h
• alphabet.cpp
• alphabet.h
• annot.cpp
• annot.h
• assert_helpers.h
• auto_array.h
• binary_sa_search.h
• bitpack.h
• bitset.h
• blockwise_sa.h
• bowtie
• bowtie-build
• bowtie-inspect
• bowtie_build_main.cpp
• bowtie_inspect.cpp
• bowtie_main.cpp
• btypes.h
• ccnt_lut.cpp
• chaincat.cpp
• color.cpp
• color.h
• color_dec.cpp
• color_dec.h
• debian/
• diff_sample.h
• doc/
• ebwt.cpp
• ebwt.h
• ebwt_build.cpp
• ebwt_search.cpp
• ebwt_search.h
• ebwt_search_backtrack.h
• ebwt_search_util.cpp
• ebwt_search_util.h
• edit.cpp
• edit.h
• endian_swap.h
• fast_mutex.h
• filebuf.h
• formats.h
• genomes/
• hit.cpp
• hit.h
• hit_set.cpp
• hit_set.h
• indexes/
• log.cpp
• log.h
• mm.h
• multikey_qsort.h
• pat.cpp
• pat.h
• pool.h
• processor_support.h
• qual.cpp
• qual.h
• random_source.h
• random_test.cpp
• range.h
• range_cache.h
• range_chaser.h
• range_source.h
• reads/
• ref_aligner.cpp
• ref_aligner.h
• ref_read.cpp
• ref_read.h
• reference.h
• refmap.cpp
• refmap.h
• row_chaser.h
• sam.cpp
• sam.h
• scripts/
• search_1mm_phase1.c
• search_1mm_phase2.c
• search_23mm_phase1.c
• search_23mm_phase2.c
• search_23mm_phase3.c
• search_exact.c
• search_globals.h
• search_seeded_phase1.c
• search_seeded_phase2.c
• search_seeded_phase3.c
• search_seeded_phase4.c
• sequence_io.h
• shmem.cpp
• shmem.h
• str_util.h
• third_party/
• threading.h
• timer.h
• tinythread.cpp
• tinythread.h
• tokenize.h
• word_io.h
• zbox.h