Index of /data/main/b/bowtie2/2.5.4-1

• Parent Directory
• AUTHORS
• BOWTIE2_VERSION
• CMakeLists.txt
• LICENSE
• MANUAL
• MANUAL.markdown
• Makefile
• NEWS
• README.md
• TUTORIAL
• aligner_bt.cpp
• aligner_bt.h
• aligner_cache.cpp
• aligner_cache.h
• aligner_driver.cpp
• aligner_driver.h
• aligner_metrics.h
• aligner_report.h
• aligner_result.cpp
• aligner_result.h
• aligner_seed.cpp
• aligner_seed.h
• aligner_seed2.cpp
• aligner_seed2.h
• aligner_seed_policy.cpp
• aligner_seed_policy.h
• aligner_sw.cpp
• aligner_sw.h
• aligner_sw_common.h
• aligner_sw_driver.cpp
• aligner_sw_driver.h
• aligner_sw_nuc.h
• aligner_swsse.cpp
• aligner_swsse.h
• aligner_swsse_ee_i16.cpp
• aligner_swsse_ee_u8.cpp
• aligner_swsse_loc_i16.cpp
• aligner_swsse_loc_u8.cpp
• aln_sink.cpp
• aln_sink.h
• alphabet.cpp
• alphabet.h
• assert_helpers.h
• banded.cpp
• banded.h
• binary_sa_search.h
• bitpack.h
• blockwise_sa.h
• bowtie2
• bowtie2-build
• bowtie2-inspect
• bowtie_build_main.cpp
• bowtie_main.cpp
• bt2_build.cpp
• bt2_dp.cpp
• bt2_idx.cpp
• bt2_idx.h
• bt2_inspect.cpp
• bt2_io.cpp
• bt2_locks.cpp
• bt2_locks.h
• bt2_search.cpp
• bt2_search.h
• bt2_util.cpp
• btypes.h
• ccnt_lut.cpp
• concurrentqueue.h
• cpu_numa_info.cpp
• cpu_numa_info.h
• debian/
• diff_sample.cpp
• diff_sample.h
• doc/
• dp_framer.cpp
• dp_framer.h
• ds.cpp
• ds.h
• edit.cpp
• edit.h
• endian_swap.h
• example/
• fast_mutex.h
• filebuf.h
• formats.h
• group_walk.cpp
• group_walk.h
• ival_list.cpp
• ival_list.h
• limit.cpp
• limit.h
• ls.cpp
• ls.h
• mask.cpp
• mask.h
• mem_ids.h
• mm.h
• multikey_qsort.cpp
• multikey_qsort.h
• opts.h
• outq.cpp
• outq.h
• pat.cpp
• pat.h
• pe.cpp
• pe.h
• presets.cpp
• presets.h
• processor_support.h
• qual.cpp
• qual.h
• random_source.cpp
• random_source.h
• random_util.cpp
• random_util.h
• read.h
• read_qseq.cpp
• ref_coord.cpp
• ref_coord.h
• ref_read.cpp
• ref_read.h
• reference.cpp
• reference.h
• sam.cpp
• sam.h
• scoring.cpp
• scoring.h
• scripts/
• search_globals.h
• sequence_io.h
• shmem.cpp
• shmem.h
• simple_func.cpp
• simple_func.h
• sse_util.cpp
• sse_util.h
• sse_wrap.h
• sstring.cpp
• sstring.h
• str_util.h
• third_party/
• threading.h
• threadpool.h
• timer.h
• tokenize.h
• unique.cpp
• unique.h
• util.h
• word_io.h
• zbox.h
• zstd_decompress.cpp
• zstd_decompress.h