Description: Use packaged libs available in our distribution instead of
 upstream vendored deps
Author: Nilesh Patra <nilesh@debian.org>
Forwarded: not-needed
Last-Update: 2021-07-13
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -33,10 +33,9 @@
    message(FATAL_ERROR "zlib not found. Required for reading FASTQ files" )
  endif( ZLIB_FOUND )
 
-include_directories(../dependencies/CppNumericalSolvers-v1/include)
-include_directories(../dependencies/eigen-3.3.7)
-include_directories(../dependencies/LBFGSpp-2020-03-06/include)
-
+include_directories(/usr/include/eigen3)
+include_directories(/usr/include)
+include_directories(/usr/include/LBFGSpp)
 
 if(LINK MATCHES static)
     if (UNIX AND NOT APPLE)