Index of /data/main/c/cpptraj/5.1.0+dfsg-5/src

• Parent Directory
• Action.h
• ActionFrameCounter.cpp
• ActionFrameCounter.h
• ActionList.cpp
• ActionList.h
• ActionState.h
• ActionTopWriter.cpp
• ActionTopWriter.h
• Action_Align.cpp
• Action_Align.h
• Action_Angle.cpp
• Action_Angle.h
• Action_AreaPerMol.cpp
• Action_AreaPerMol.h
• Action_AtomMap.cpp
• Action_AtomMap.h
• Action_AtomicCorr.cpp
• Action_AtomicCorr.h
• Action_AtomicFluct.cpp
• Action_AtomicFluct.h
• Action_AutoImage.cpp
• Action_AutoImage.h
• Action_Average.cpp
• Action_Average.h
• Action_Bounds.cpp
• Action_Bounds.h
• Action_Box.cpp
• Action_Box.h
• Action_Center.cpp
• Action_Center.h
• Action_Channel.cpp
• Action_Channel.h
• Action_CheckChirality.cpp
• Action_CheckChirality.h
• Action_CheckStructure.cpp
• Action_CheckStructure.h
• Action_Closest.cpp
• Action_Closest.h
• Action_ClusterDihedral.cpp
• Action_ClusterDihedral.h
• Action_Contacts.cpp
• Action_Contacts.h
• Action_CreateCrd.cpp
• Action_CreateCrd.h
• Action_CreateReservoir.cpp
• Action_CreateReservoir.h
• Action_DNAionTracker.cpp
• Action_DNAionTracker.h
• Action_DSSP.cpp
• Action_DSSP.h
• Action_Density.cpp
• Action_Density.h
• Action_Diffusion.cpp
• Action_Diffusion.h
• Action_Dihedral.cpp
• Action_Dihedral.h
• Action_DihedralRMS.cpp
• Action_DihedralRMS.h
• Action_Dipole.cpp
• Action_Dipole.h
• Action_DistRmsd.cpp
• Action_DistRmsd.h
• Action_Distance.cpp
• Action_Distance.h
• Action_Energy.cpp
• Action_Energy.h
• Action_Esander.cpp
• Action_Esander.h
• Action_FilterByData.cpp
• Action_FilterByData.h
• Action_FixAtomOrder.cpp
• Action_FixAtomOrder.h
• Action_FixImagedBonds.cpp
• Action_FixImagedBonds.h
• Action_GIST.cpp
• Action_GIST.h
• Action_Grid.cpp
• Action_Grid.h
• Action_GridFreeEnergy.cpp
• Action_GridFreeEnergy.h
• Action_HydrogenBond.cpp
• Action_HydrogenBond.h
• Action_Image.cpp
• Action_Image.h
• Action_InfraredSpectrum.cpp
• Action_InfraredSpectrum.h
• Action_Jcoupling.cpp
• Action_Jcoupling.h
• Action_LESsplit.cpp
• Action_LESsplit.h
• Action_LIE.cpp
• Action_LIE.h
• Action_LipidOrder.cpp
• Action_LipidOrder.h
• Action_MRT.cpp
• Action_MRT.h
• Action_MakeStructure.cpp
• Action_MakeStructure.h
• Action_Mask.cpp
• Action_Mask.h
• Action_Matrix.cpp
• Action_Matrix.h
• Action_MinImage.cpp
• Action_MinImage.h
• Action_Molsurf.cpp
• Action_Molsurf.h
• Action_MultiDihedral.cpp
• Action_MultiDihedral.h
• Action_MultiVector.cpp
• Action_MultiVector.h
• Action_NAstruct.cpp
• Action_NAstruct.h
• Action_NMRrst.cpp
• Action_NMRrst.h
• Action_NativeContacts.cpp
• Action_NativeContacts.h
• Action_OrderParameter.cpp
• Action_OrderParameter.h
• Action_Outtraj.cpp
• Action_Outtraj.h
• Action_PairDist.cpp
• Action_PairDist.h
• Action_Pairwise.cpp
• Action_Pairwise.h
• Action_Principal.cpp
• Action_Principal.h
• Action_Projection.cpp
• Action_Projection.h
• Action_Pucker.cpp
• Action_Pucker.h
• Action_Radgyr.cpp
• Action_Radgyr.h
• Action_Radial.cpp
• Action_Radial.h
• Action_RandomizeIons.cpp
• Action_RandomizeIons.h
• Action_Remap.cpp
• Action_Remap.h
• Action_ReplicateCell.cpp
• Action_ReplicateCell.h
• Action_Rmsd.cpp
• Action_Rmsd.h
• Action_Rotate.cpp
• Action_Rotate.h
• Action_RunningAvg.cpp
• Action_RunningAvg.h
• Action_STFC_Diffusion.cpp
• Action_STFC_Diffusion.h
• Action_Scale.cpp
• Action_Scale.h
• Action_SetVelocity.cpp
• Action_SetVelocity.h
• Action_Spam.cpp
• Action_Spam.h
• Action_Strip.cpp
• Action_Strip.h
• Action_Surf.cpp
• Action_Surf.h
• Action_SymmetricRmsd.cpp
• Action_SymmetricRmsd.h
• Action_Temperature.cpp
• Action_Temperature.h
• Action_Time.cpp
• Action_Time.h
• Action_Translate.cpp
• Action_Translate.h
• Action_Unstrip.cpp
• Action_Unstrip.h
• Action_Unwrap.cpp
• Action_Unwrap.h
• Action_Vector.cpp
• Action_Vector.h
• Action_VelocityAutoCorr.cpp
• Action_VelocityAutoCorr.h
• Action_Volmap.cpp
• Action_Volmap.h
• Action_Volume.cpp
• Action_Volume.h
• Action_Watershell.cpp
• Action_Watershell.h
• Action_XtalSymm.cpp
• Action_XtalSymm.h
• Analysis.h
• AnalysisList.cpp
• AnalysisList.h
• AnalysisState.h
• Analysis_AmdBias.cpp
• Analysis_AmdBias.h
• Analysis_AutoCorr.cpp
• Analysis_AutoCorr.h
• Analysis_Average.cpp
• Analysis_Average.h
• Analysis_Clustering.cpp
• Analysis_Clustering.h
• Analysis_ConstantPHStats.cpp
• Analysis_ConstantPHStats.h
• Analysis_Corr.cpp
• Analysis_Corr.h
• Analysis_CrankShaft.cpp
• Analysis_CrankShaft.h
• Analysis_CrdFluct.cpp
• Analysis_CrdFluct.h
• Analysis_CrossCorr.cpp
• Analysis_CrossCorr.h
• Analysis_CurveFit.cpp
• Analysis_CurveFit.h
• Analysis_Divergence.cpp
• Analysis_Divergence.h
• Analysis_EvalPlateau.cpp
• Analysis_EvalPlateau.h
• Analysis_FFT.cpp
• Analysis_FFT.h
• Analysis_HausdorffDistance.cpp
• Analysis_HausdorffDistance.h
• Analysis_Hist.cpp
• Analysis_Hist.h
• Analysis_IRED.cpp
• Analysis_IRED.h
• Analysis_Integrate.cpp
• Analysis_Integrate.h
• Analysis_KDE.cpp
• Analysis_KDE.h
• Analysis_Lifetime.cpp
• Analysis_Lifetime.h
• Analysis_LowestCurve.cpp
• Analysis_LowestCurve.h
• Analysis_Matrix.cpp
• Analysis_Matrix.h
• Analysis_MeltCurve.cpp
• Analysis_MeltCurve.h
• Analysis_Modes.cpp
• Analysis_Modes.h
• Analysis_MultiHist.cpp
• Analysis_MultiHist.h
• Analysis_Multicurve.cpp
• Analysis_Multicurve.h
• Analysis_Overlap.cpp
• Analysis_Overlap.h
• Analysis_PhiPsi.cpp
• Analysis_PhiPsi.h
• Analysis_Regression.cpp
• Analysis_Regression.h
• Analysis_RemLog.cpp
• Analysis_RemLog.h
• Analysis_Rms2d.cpp
• Analysis_Rms2d.h
• Analysis_RmsAvgCorr.cpp
• Analysis_RmsAvgCorr.h
• Analysis_Rotdif.cpp
• Analysis_Rotdif.h
• Analysis_RunningAvg.cpp
• Analysis_RunningAvg.h
• Analysis_Slope.cpp
• Analysis_Slope.h
• Analysis_Spline.cpp
• Analysis_Spline.h
• Analysis_State.cpp
• Analysis_State.h
• Analysis_Statistics.cpp
• Analysis_Statistics.h
• Analysis_TI.cpp
• Analysis_TI.h
• Analysis_Timecorr.cpp
• Analysis_Timecorr.h
• Analysis_VectorMath.cpp
• Analysis_VectorMath.h
• Analysis_Wavelet.cpp
• Analysis_Wavelet.h
• ArgList.cpp
• ArgList.h
• Array1D.cpp
• Array1D.h
• ArrayIterator.h
• AssociatedData.cpp
• AssociatedData.h
• Atom.cpp
• Atom.h
• AtomMap.cpp
• AtomMap.h
• AtomMask.cpp
• AtomMask.h
• AtomTopType.h
• AtomType.h
• AxisType.cpp
• AxisType.h
• BaseIOtype.h
• BondSearch.cpp
• BondSearch.h
• Box.cpp
• Box.h
• BoxArgs.cpp
• BoxArgs.h
• BufferedFrame.cpp
• BufferedFrame.h
• BufferedLine.cpp
• BufferedLine.h
• ByteRoutines.cpp
• ByteRoutines.h
• CIFfile.cpp
• CIFfile.h
• CMakeLists.txt
• CharMask.cpp
• CharMask.h
• CharmmParamFile.cpp
• CharmmParamFile.h
• ClusterDist.cpp
• ClusterDist.h
• ClusterList.cpp
• ClusterList.h
• ClusterMap.cpp
• ClusterMap.h
• ClusterMatrix.cpp
• ClusterMatrix.h
• ClusterNode.cpp
• ClusterNode.h
• ClusterSieve.cpp
• ClusterSieve.h
• Cluster_DBSCAN.cpp
• Cluster_DBSCAN.h
• Cluster_DPeaks.cpp
• Cluster_DPeaks.h
• Cluster_HierAgglo.cpp
• Cluster_HierAgglo.h
• Cluster_Kmeans.cpp
• Cluster_Kmeans.h
• Cluster_ReadInfo.cpp
• Cluster_ReadInfo.h
• Cmd.cpp
• Cmd.h
• CmdInput.cpp
• CmdInput.h
• CmdList.cpp
• CmdList.h
• Command.cpp
• Command.h
• CompactFrameArray.cpp
• CompactFrameArray.h
• ComplexArray.cpp
• ComplexArray.h
• Constants.h
• Constraints.cpp
• Constraints.h
• ControlBlock.h
• ControlBlock_For.cpp
• ControlBlock_For.h
• CoordinateInfo.cpp
• CoordinateInfo.h
• Corr.cpp
• Corr.h
• Cph.cpp
• Cph.h
• Cpptraj.cpp
• Cpptraj.h
• CpptrajFile.cpp
• CpptrajFile.h
• CpptrajState.cpp
• CpptrajState.h
• CpptrajStdio.cpp
• CpptrajStdio.h
• CurveFit.cpp
• CurveFit.h
• DataFile.cpp
• DataFile.h
• DataFileList.cpp
• DataFileList.h
• DataFilter.cpp
• DataFilter.h
• DataIO.cpp
• DataIO.h
• DataIO_CCP4.cpp
• DataIO_CCP4.h
• DataIO_CharmmFastRep.cpp
• DataIO_CharmmFastRep.h
• DataIO_CharmmOutput.cpp
• DataIO_CharmmOutput.h
• DataIO_CharmmRepLog.cpp
• DataIO_CharmmRepLog.h
• DataIO_CharmmRtfPrm.cpp
• DataIO_CharmmRtfPrm.h
• DataIO_Cmatrix.cpp
• DataIO_Cmatrix.h
• DataIO_Cpout.cpp
• DataIO_Cpout.h
• DataIO_Evecs.cpp
• DataIO_Evecs.h
• DataIO_Gnuplot.cpp
• DataIO_Gnuplot.h
• DataIO_Grace.cpp
• DataIO_Grace.h
• DataIO_Mdout.cpp
• DataIO_Mdout.h
• DataIO_NC_Cmatrix.cpp
• DataIO_NC_Cmatrix.h
• DataIO_OpenDx.cpp
• DataIO_OpenDx.h
• DataIO_Peaks.cpp
• DataIO_Peaks.h
• DataIO_RemLog.cpp
• DataIO_RemLog.h
• DataIO_Std.cpp
• DataIO_Std.h
• DataIO_VecTraj.cpp
• DataIO_VecTraj.h
• DataIO_XVG.cpp
• DataIO_XVG.h
• DataIO_Xplor.cpp
• DataIO_Xplor.h
• DataSet.cpp
• DataSet.h
• DataSetList.cpp
• DataSetList.h
• DataSet_1D.cpp
• DataSet_1D.h
• DataSet_2D.h
• DataSet_3D.cpp
• DataSet_3D.h
• DataSet_Cmatrix.cpp
• DataSet_Cmatrix.h
• DataSet_Cmatrix_DISK.cpp
• DataSet_Cmatrix_DISK.h
• DataSet_Cmatrix_MEM.cpp
• DataSet_Cmatrix_MEM.h
• DataSet_Cmatrix_NOMEM.cpp
• DataSet_Cmatrix_NOMEM.h
• DataSet_Coords.cpp
• DataSet_Coords.h
• DataSet_Coords_CRD.cpp
• DataSet_Coords_CRD.h
• DataSet_Coords_REF.cpp
• DataSet_Coords_REF.h
• DataSet_Coords_TRJ.cpp
• DataSet_Coords_TRJ.h
• DataSet_GridDbl.cpp
• DataSet_GridDbl.h
• DataSet_GridFlt.cpp
• DataSet_GridFlt.h
• DataSet_Mat3x3.cpp
• DataSet_Mat3x3.h
• DataSet_MatrixDbl.cpp
• DataSet_MatrixDbl.h
• DataSet_MatrixFlt.cpp
• DataSet_MatrixFlt.h
• DataSet_Mesh.cpp
• DataSet_Mesh.h
• DataSet_Modes.cpp
• DataSet_Modes.h
• DataSet_PHREMD.h
• DataSet_PHREMD_Explicit.cpp
• DataSet_PHREMD_Explicit.h
• DataSet_PHREMD_Implicit.cpp
• DataSet_PHREMD_Implicit.h
• DataSet_Parameters.cpp
• DataSet_Parameters.h
• DataSet_RemLog.cpp
• DataSet_RemLog.h
• DataSet_StringVar.cpp
• DataSet_StringVar.h
• DataSet_Tensor.cpp
• DataSet_Tensor.h
• DataSet_Topology.cpp
• DataSet_Topology.h
• DataSet_Vector.cpp
• DataSet_Vector.h
• DataSet_Vector_Scalar.cpp
• DataSet_Vector_Scalar.h
• DataSet_double.cpp
• DataSet_double.h
• DataSet_float.cpp
• DataSet_float.h
• DataSet_integer.h
• DataSet_integer_disk.cpp
• DataSet_integer_disk.h
• DataSet_integer_mem.cpp
• DataSet_integer_mem.h
• DataSet_pH.cpp
• DataSet_pH.h
• DataSet_string.cpp
• DataSet_string.h
• DataSet_unsignedInt.cpp
• DataSet_unsignedInt.h
• Deprecated.cpp
• Deprecated.h
• DihedralSearch.cpp
• DihedralSearch.h
• Dimension.h
• DispatchObject.h
• DistRoutines.cpp
• DistRoutines.h
• Energy.cpp
• Energy.h
• EnergyArray.cpp
• EnergyArray.h
• EnergyKernel_Adjust.h
• EnergyKernel_NonBond_Simple.h
• EnergyKernel_Nonbond.h
• Energy_Sander.cpp
• Energy_Sander.h
• EnsembleIn.cpp
• EnsembleIn.h
• EnsembleIn_Multi.cpp
• EnsembleIn_Multi.h
• EnsembleIn_Single.cpp
• EnsembleIn_Single.h
• EnsembleNavigator.cpp
• EnsembleNavigator.h
• EnsembleOut.cpp
• EnsembleOut.h
• EnsembleOutList.cpp
• EnsembleOutList.h
• EnsembleOut_Multi.cpp
• EnsembleOut_Multi.h
• EnsembleOut_Single.cpp
• EnsembleOut_Single.h
• Ewald.cpp
• Ewald.h
• Ewald_ParticleMesh.cpp
• Ewald_ParticleMesh.h
• Ewald_Regular.cpp
• Ewald_Regular.h
• ExclusionArray.cpp
• ExclusionArray.h
• Exec.h
• Exec_AddMissingRes.cpp
• Exec_AddMissingRes.h
• Exec_AddMissingRes_Pres.h
• Exec_Analyze.cpp
• Exec_Analyze.h
• Exec_Calc.cpp
• Exec_Calc.h
• Exec_CatCrd.cpp
• Exec_CatCrd.h
• Exec_Change.cpp
• Exec_Change.h
• Exec_ClusterMap.cpp
• Exec_ClusterMap.h
• Exec_CombineCoords.cpp
• Exec_CombineCoords.h
• Exec_Commands.cpp
• Exec_Commands.h
• Exec_CompareTop.cpp
• Exec_CompareTop.h
• Exec_CrdAction.cpp
• Exec_CrdAction.h
• Exec_CrdOut.cpp
• Exec_CrdOut.h
• Exec_CreateSet.cpp
• Exec_CreateSet.h
• Exec_DataFile.cpp
• Exec_DataFile.h
• Exec_DataFilter.cpp
• Exec_DataFilter.h
• Exec_DataSetCmd.cpp
• Exec_DataSetCmd.h
• Exec_Emin.cpp
• Exec_Emin.h
• Exec_Flatten.cpp
• Exec_Flatten.h
• Exec_GenerateAmberRst.cpp
• Exec_GenerateAmberRst.h
• Exec_Graft.cpp
• Exec_Graft.h
• Exec_Help.cpp
• Exec_Help.h
• Exec_LoadCrd.cpp
• Exec_LoadCrd.h
• Exec_LoadTraj.cpp
• Exec_LoadTraj.h
• Exec_ParallelAnalysis.cpp
• Exec_ParallelAnalysis.h
• Exec_ParmBox.cpp
• Exec_ParmBox.h
• Exec_ParmSolvent.cpp
• Exec_ParmSolvent.h
• Exec_ParmStrip.cpp
• Exec_ParmStrip.h
• Exec_ParmWrite.cpp
• Exec_ParmWrite.h
• Exec_PermuteDihedrals.cpp
• Exec_PermuteDihedrals.h
• Exec_Precision.cpp
• Exec_Precision.h
• Exec_PrepareForLeap.cpp
• Exec_PrepareForLeap.h
• Exec_PrintData.cpp
• Exec_PrintData.h
• Exec_Random.cpp
• Exec_Random.h
• Exec_ReadData.cpp
• Exec_ReadData.h
• Exec_ReadEnsembleData.cpp
• Exec_ReadEnsembleData.h
• Exec_ReadInput.cpp
• Exec_ReadInput.h
• Exec_RotateDihedral.cpp
• Exec_RotateDihedral.h
• Exec_RunAnalysis.cpp
• Exec_RunAnalysis.h
• Exec_ScaleDihedralK.cpp
• Exec_ScaleDihedralK.h
• Exec_SequenceAlign.cpp
• Exec_SequenceAlign.h
• Exec_Set.cpp
• Exec_Set.h
• Exec_Show.cpp
• Exec_Show.h
• Exec_SortEnsembleData.cpp
• Exec_SortEnsembleData.h
• Exec_SplitCoords.cpp
• Exec_SplitCoords.h
• Exec_System.cpp
• Exec_System.h
• Exec_Top.cpp
• Exec_Top.h
• Exec_Traj.cpp
• Exec_Traj.h
• Exec_UpdateParameters.cpp
• Exec_UpdateParameters.h
• Exec_ViewRst.cpp
• Exec_ViewRst.h
• ExternalFxn.cpp
• ExternalFxn.h
• FileIO.h
• FileIO_Bzip2.cpp
• FileIO_Bzip2.h
• FileIO_Gzip.cpp
• FileIO_Gzip.h
• FileIO_Mpi.cpp
• FileIO_Mpi.h
• FileIO_MpiShared.cpp
• FileIO_MpiShared.h
• FileIO_Std.cpp
• FileIO_Std.h
• FileName.cpp
• FileName.h
• FileType.cpp
• FileType.h
• FileTypes.cpp
• FileTypes.h
• File_TempName.cpp
• File_TempName.h
• FindDepend.cpp
• ForLoop.cpp
• ForLoop.h
• ForLoop_dataSetBlocks.cpp
• ForLoop_dataSetBlocks.h
• ForLoop_integer.cpp
• ForLoop_integer.h
• ForLoop_list.cpp
• ForLoop_list.h
• ForLoop_mask.cpp
• ForLoop_mask.h
• ForLoop_overSets.cpp
• ForLoop_overSets.h
• Frame.cpp
• Frame.h
• FrameArray.h
• FramePtrArray.h
• Grid.h
• GridAction.cpp
• GridAction.h
• GridBin.h
• HistBin.cpp
• HistBin.h
• Hungarian.cpp
• Hungarian.h
• ImageOption.h
• ImageRoutines.cpp
• ImageRoutines.h
• ImageTypes.h
• Image_List.h
• Image_List_Mask.cpp
• Image_List_Mask.h
• Image_List_Pair.cpp
• Image_List_Pair.h
• Image_List_Pair_CoM.h
• Image_List_Pair_First.h
• Image_List_Pair_Geom.h
• Image_List_Unit.cpp
• Image_List_Unit.h
• Image_List_Unit_CoM.h
• Image_List_Unit_First.h
• Image_List_Unit_Geom.h
• InputTrajCommon.cpp
• InputTrajCommon.h
• KDE.cpp
• KDE.h
• Makefile
• MapAtom.cpp
• MapAtom.h
• MaskArray.cpp
• MaskArray.h
• MaskToken.cpp
• MaskToken.h
• Matrix.h
• Matrix_3x3.cpp
• Matrix_3x3.h
• MdOpts.cpp
• MdOpts.h
• MetaData.cpp
• MetaData.h
• Minimize_SteepestDescent.cpp
• Minimize_SteepestDescent.h
• Mol.cpp
• Mol.h
• Mol2File.cpp
• Mol2File.h
• Molecule.h
• NC_Cmatrix.cpp
• NC_Cmatrix.h
• NC_Routines.cpp
• NC_Routines.h
• NameType.cpp
• NameType.h
• NetcdfFile.cpp
• NetcdfFile.h
• OMM_helpers.cpp
• OMM_helpers.h
• OnlineVarT.h
• OutputTrajCommon.cpp
• OutputTrajCommon.h
• PDBfile.cpp
• PDBfile.h
• PairList.cpp
• PairList.h
• PairListLoop.h
• Parallel.cpp
• Parallel.h
• ParallelNetcdf.cpp
• ParallelNetcdf.h
• ParameterHolders.h
• ParameterSet.cpp
• ParameterSet.h
• ParameterTypes.h
• ParmFile.cpp
• ParmFile.h
• ParmIO.h
• Parm_Amber.cpp
• Parm_Amber.h
• Parm_CIF.cpp
• Parm_CIF.h
• Parm_CharmmPsf.cpp
• Parm_CharmmPsf.h
• Parm_Gromacs.cpp
• Parm_Gromacs.h
• Parm_Mol2.cpp
• Parm_Mol2.h
• Parm_PDB.cpp
• Parm_PDB.h
• Parm_SDF.cpp
• Parm_SDF.h
• Parm_Tinker.cpp
• Parm_Tinker.h
• PotentialFunction.cpp
• PotentialFunction.h
• PotentialTerm.cpp
• PotentialTerm.h
• PotentialTerm_Angle.cpp
• PotentialTerm_Angle.h
• PotentialTerm_Bond.cpp
• PotentialTerm_Bond.h
• PotentialTerm_Dihedral.cpp
• PotentialTerm_Dihedral.h
• PotentialTerm_LJ_Coulomb.cpp
• PotentialTerm_LJ_Coulomb.h
• PotentialTerm_OpenMM.cpp
• PotentialTerm_OpenMM.h
• ProgressBar.cpp
• ProgressBar.h
• ProgressTimer.cpp
• ProgressTimer.h
• PubFFT.cpp
• PubFFT.h
• RNG.cpp
• RNG.h
• RNG_Marsaglia.cpp
• RNG_Marsaglia.h
• RNG_MersenneTwister.cpp
• RNG_MersenneTwister.h
• RNG_PCG32.cpp
• RNG_PCG32.h
• RNG_Stdlib.cpp
• RNG_Stdlib.h
• RNG_Xoshiro128pp.cpp
• RNG_Xoshiro128pp.h
• RPNcalc.cpp
• RPNcalc.h
• Random.cpp
• Random.h
• Range.cpp
• Range.h
• RangeToken.h
• ReadLine.cpp
• ReadLine.h
• ReferenceAction.cpp
• ReferenceAction.h
• ReferenceFrame.h
• RemdReservoirNC.cpp
• RemdReservoirNC.h
• ReplicaDimArray.h
• ReplicaInfo.h
• Residue.cpp
• Residue.h
• SDFfile.cpp
• SDFfile.h
• Segment.h
• SimplexMin.cpp
• SimplexMin.h
• SpaceGroup.cpp
• SpaceGroup.h
• Spline.cpp
• Spline.h
• SplineFxnTable.cpp
• SplineFxnTable.h
• StringRoutines.cpp
• StringRoutines.h
• StructureCheck.cpp
• StructureCheck.h
• StructureMapper.cpp
• StructureMapper.h
• SymbolExporting-installversion.h.in
• SymbolExporting.h
• SymmetricRmsdCalc.cpp
• SymmetricRmsdCalc.h
• SymmetricTensor.h
• TextFormat.cpp
• TextFormat.h
• Timer.cpp
• Timer.h
• TinkerFile.cpp
• TinkerFile.h
• TopInfo.cpp
• TopInfo.h
• Topology.cpp
• Topology.h
• TorsionRoutines.cpp
• TorsionRoutines.h
• TrajFrameCounter.cpp
• TrajFrameCounter.h
• TrajFrameIndex.h
• TrajIOarray.cpp
• TrajIOarray.h
• Traj_AmberCoord.cpp
• Traj_AmberCoord.h
• Traj_AmberNetcdf.cpp
• Traj_AmberNetcdf.h
• Traj_AmberRestart.cpp
• Traj_AmberRestart.h
• Traj_AmberRestartNC.cpp
• Traj_AmberRestartNC.h
• Traj_Binpos.cpp
• Traj_Binpos.h
• Traj_CIF.cpp
• Traj_CIF.h
• Traj_CharmmCor.cpp
• Traj_CharmmCor.h
• Traj_CharmmDcd.cpp
• Traj_CharmmDcd.h
• Traj_CharmmRestart.cpp
• Traj_CharmmRestart.h
• Traj_Conflib.cpp
• Traj_Conflib.h
• Traj_DTR.cpp
• Traj_DTR.h
• Traj_GmxDump.cpp
• Traj_GmxDump.h
• Traj_GmxTng.cpp
• Traj_GmxTng.h
• Traj_GmxTrX.cpp
• Traj_GmxTrX.h
• Traj_GmxXtc.cpp
• Traj_GmxXtc.h
• Traj_Gro.cpp
• Traj_Gro.h
• Traj_Mol2File.cpp
• Traj_Mol2File.h
• Traj_NcEnsemble.cpp
• Traj_NcEnsemble.h
• Traj_PDBfile.cpp
• Traj_PDBfile.h
• Traj_SDF.cpp
• Traj_SDF.h
• Traj_SQM.cpp
• Traj_SQM.h
• Traj_Tinker.cpp
• Traj_Tinker.h
• Traj_XYZ.cpp
• Traj_XYZ.h
• TrajectoryFile.cpp
• TrajectoryFile.h
• TrajectoryIO.cpp
• TrajectoryIO.h
• Trajin.h
• TrajinList.cpp
• TrajinList.h
• Trajin_Multi.cpp
• Trajin_Multi.h
• Trajin_Single.cpp
• Trajin_Single.h
• TrajoutList.cpp
• TrajoutList.h
• Trajout_Single.cpp
• Trajout_Single.h
• TypeNameHolder.h
• Unit.h
• UpdateParameters.h
• Vec3.cpp
• Vec3.h
• Version.h
• ViewRst.cpp
• ViewRst.h
• cpptraj.Doxyfile
• cpptrajdepend
• cpptrajfiles
• cuda_kernels/
• helpme_standalone.h
• main.cpp
• molsurf.c
• molsurf.h
• pcg_extras.hpp
• pcg_random.hpp
• pcg_uint128.hpp
• pub_fft.F90
• tng/
• xdrfile/
• xoshiro128plusplus.cpp
• xoshiro128plusplus.h