Description: apply CPPFLAGS too.
 Among other things, it enables fortifying sources.
Author: Étienne Mollier <emollier@debian.org>
Forwarded: not-needed
Last-Update: 2022-08-03
---
This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
--- a/Makefile
+++ b/Makefile
@@ -10,34 +10,34 @@ ALL = daligner HPC.daligner LAsort LAmer
 all: $(ALL)
 
 daligner: daligner.c filter.c filter.h lsd.sort.c lsd.sort.h align.c align.h DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o daligner daligner.c filter.c lsd.sort.c align.c DB.c QV.c -lpthread -lm $(LDFLAGS)
 
 HPC.daligner: HPC.daligner.c DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm $(LDFLAGS)
 
 LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm $(LDFLAGS)
 
 LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm $(LDFLAGS)
 
 LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm $(LDFLAGS)
 
 LA2ONE: LA2ONE.c align.c align.h DB.c DB.h QV.c QV.h ONElib.c ONElib.h
-	$(CC) $(CFLAGS) -o LA2ONE LA2ONE.c align.c DB.c QV.c ONElib.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o LA2ONE LA2ONE.c align.c DB.c QV.c ONElib.c -lm $(LDFLAGS)
 
 LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm $(LDFLAGS)
 
 LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm $(LDFLAGS)
 
 LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h
-	$(CC) $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm $(LDFLAGS)
 
 ONE2LA: ONE2LA.c align.c align.h DB.c DB.h QV.c QV.h ONElib.c ONElib.h
-	$(CC) $(CFLAGS) -o ONE2LA ONE2LA.c align.c DB.c QV.c ONElib.c -lm $(LDFLAGS)
+	$(CC) $(CPPFLAGS) $(CFLAGS) -o ONE2LA ONE2LA.c align.c DB.c QV.c ONElib.c -lm $(LDFLAGS)
 
 clean:
 	rm -f $(ALL)