name: Relion 3.1 processed tutorial data
author: Sjors H. W. Scheres (2019)
license: CC-BY 4.0
url: ftp://ftp.mrc-lmb.cam.ac.uk/pub/scheres/relion31_tutorial.pdf
description: >
    Beta-galactosidase data set collected by Takayuki Kato from the Namba group at
    Osaka university, Japan (EMPIAR-10204) processed by RELION 3.1 as outlined in
    the RELION 3.1 tutorial.

data:
 - url: https://github.com/dials/data-files/raw/1bbf07e917ad0e04efbf9b8463e39e0ce2fd2298/relion_tutorial/relion_tutorial_files.tar.xz
   files:
   - AutoPick/job006/coords_suffix_autopick.star
   - AutoPick/job006/default_pipeline.star
   - AutoPick/job006/job_pipeline.star
   - AutoPick/job006/job.star
   - AutoPick/job006/Movies/20170629_00021_frameImage_autopick.star
   - AutoPick/job006/Movies/20170629_00022_frameImage_autopick.star
   - AutoPick/job006/Movies/20170629_00023_frameImage_autopick.star
   - AutoPick/job006/Movies/20170629_00024_frameImage_autopick.star
   - AutoPick/job006/Movies/20170629_00025_frameImage_autopick.star
   - AutoPick/job006/note.txt
   - AutoPick/job006/RELION_JOB_EXIT_SUCCESS
   - AutoPick/job006/run.err
   - AutoPick/job006/.run.err.tail
   - AutoPick/job006/run.job
   - AutoPick/job006/run.out
   - AutoPick/job006/.run.out.tail
   - AutoPick/job006/summary.star
   - AutoPick/job010/coords_suffix_autopick.star
   - AutoPick/job010/default_pipeline.star
   - AutoPick/job010/job_pipeline.star
   - AutoPick/job010/job.star
   - AutoPick/job010/Movies/20170629_00021_frameImage_autopick.star
   - AutoPick/job010/Movies/20170629_00022_frameImage_autopick.star
   - AutoPick/job010/Movies/20170629_00023_frameImage_autopick.star
   - AutoPick/job010/Movies/20170629_00024_frameImage_autopick.star
   - AutoPick/job010/Movies/20170629_00025_frameImage_autopick.star
   - AutoPick/job010/note.txt
   - AutoPick/job010/RELION_JOB_EXIT_SUCCESS
   - AutoPick/job010/run.err
   - AutoPick/job010/.run.err.tail
   - AutoPick/job010/run.job
   - AutoPick/job010/run.out
   - AutoPick/job010/.run.out.tail
   - AutoPick/job010/summary.star
   - AutoPick/job011/coords_suffix_autopick.star
   - AutoPick/job011/default_pipeline.star
   - AutoPick/job011/job_pipeline.star
   - AutoPick/job011/job.star
   - AutoPick/job011/Movies/20170629_00021_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00022_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00023_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00024_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00025_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00026_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00027_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00028_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00029_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00030_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00031_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00035_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00036_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00037_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00039_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00040_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00042_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00043_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00044_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00045_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00046_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00047_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00048_frameImage_autopick.star
   - AutoPick/job011/Movies/20170629_00049_frameImage_autopick.star
   - AutoPick/job011/note.txt
   - AutoPick/job011/RELION_JOB_EXIT_SUCCESS
   - AutoPick/job011/run.err
   - AutoPick/job011/.run.err.tail
   - AutoPick/job011/run.job
   - AutoPick/job011/run.out
   - AutoPick/job011/.run.out.tail
   - AutoPick/job011/summary.star
   - Class2D/job008/default_pipeline.star
   - Class2D/job008/job_pipeline.star
   - Class2D/job008/job.star
   - Class2D/job008/note.txt
   - Class2D/job008/RELION_JOB_EXIT_SUCCESS
   - Class2D/job008/run.err
   - Class2D/job008/.run.err.tail
   - Class2D/job008/run_it025_data.star
   - Class2D/job008/run_it025_model.star
   - Class2D/job008/run_it025_optimiser.star
   - Class2D/job008/run_it025_sampling.star
   - Class2D/job008/run.job
   - Class2D/job008/run.out
   - Class2D/job008/.run.out.tail
   - Class2D/job013/default_pipeline.star
   - Class2D/job013/job_pipeline.star
   - Class2D/job013/job.star
   - Class2D/job013/note.txt
   - Class2D/job013/RELION_JOB_EXIT_SUCCESS
   - Class2D/job013/run.err
   - Class2D/job013/.run.err.tail
   - Class2D/job013/run_it025_data.star
   - Class2D/job013/run_it025_model.star
   - Class2D/job013/run_it025_optimiser.star
   - Class2D/job013/run_it025_sampling.star
   - Class2D/job013/run.job
   - Class2D/job013/run.out
   - Class2D/job013/.run.out.tail
   - Class3D/job016/default_pipeline.star
   - Class3D/job016/job_pipeline.star
   - Class3D/job016/job.star
   - Class3D/job016/note.txt
   - Class3D/job016/RELION_JOB_EXIT_SUCCESS
   - Class3D/job016/run.err
   - Class3D/job016/.run.err.tail
   - Class3D/job016/run_it025_data.star
   - Class3D/job016/run_it025_model.star
   - Class3D/job016/run_it025_optimiser.star
   - Class3D/job016/run_it025_sampling.star
   - Class3D/job016/run.job
   - Class3D/job016/run.out
   - Class3D/job016/.run.out.tail
   - CtfFind/job003/default_pipeline.star
   - CtfFind/job003/job_pipeline.star
   - CtfFind/job003/job.star
   - CtfFind/job003/micrographs_ctf.star
   - CtfFind/job003/note.txt
   - CtfFind/job003/RELION_JOB_EXIT_SUCCESS
   - CtfFind/job003/run.err
   - CtfFind/job003/.run.err.tail
   - CtfFind/job003/run.job
   - CtfFind/job003/run.out
   - CtfFind/job003/.run.out.tail
   - CtfRefine/job022/default_pipeline.star
   - CtfRefine/job022/job_pipeline.star
   - CtfRefine/job022/job.star
   - CtfRefine/job022/note.txt
   - CtfRefine/job022/particles_ctf_refine.star
   - CtfRefine/job022/RELION_JOB_EXIT_SUCCESS
   - CtfRefine/job022/run.err
   - CtfRefine/job022/.run.err.tail
   - CtfRefine/job022/run.job
   - CtfRefine/job022/run.out
   - CtfRefine/job022/.run.out.tail
   - CtfRefine/job023/default_pipeline.star
   - CtfRefine/job023/job_pipeline.star
   - CtfRefine/job023/job.star
   - CtfRefine/job023/mag_matrix_optics-group_1.txt
   - CtfRefine/job023/note.txt
   - CtfRefine/job023/particles_ctf_refine.star
   - CtfRefine/job023/RELION_JOB_EXIT_SUCCESS
   - CtfRefine/job023/run.err
   - CtfRefine/job023/.run.err.tail
   - CtfRefine/job023/run.job
   - CtfRefine/job023/run.out
   - CtfRefine/job023/.run.out.tail
   - CtfRefine/job024/default_pipeline.star
   - CtfRefine/job024/job_pipeline.star
   - CtfRefine/job024/job.star
   - CtfRefine/job024/note.txt
   - CtfRefine/job024/particles_ctf_refine.star
   - CtfRefine/job024/RELION_JOB_EXIT_SUCCESS
   - CtfRefine/job024/run.err
   - CtfRefine/job024/.run.err.tail
   - CtfRefine/job024/run.job
   - CtfRefine/job024/run.out
   - CtfRefine/job024/.run.out.tail
   - default_pipeline.star
   - Extract/job007/default_pipeline.star
   - Extract/job007/job_pipeline.star
   - Extract/job007/job.star
   - Extract/job007/note.txt
   - Extract/job007/particles.star
   - Extract/job007/RELION_JOB_EXIT_SUCCESS
   - Extract/job007/run.err
   - Extract/job007/.run.err.tail
   - Extract/job007/run.job
   - Extract/job007/run.out
   - Extract/job007/.run.out.tail
   - Extract/job012/default_pipeline.star
   - Extract/job012/job_pipeline.star
   - Extract/job012/job.star
   - Extract/job012/note.txt
   - Extract/job012/particles.star
   - Extract/job012/RELION_JOB_EXIT_SUCCESS
   - Extract/job012/run.err
   - Extract/job012/.run.err.tail
   - Extract/job012/run.job
   - Extract/job012/run.out
   - Extract/job012/.run.out.tail
   - Extract/job018/coords_suffix_extract.star
   - Extract/job018/default_pipeline.star
   - Extract/job018/job_pipeline.star
   - Extract/job018/job.star
   - Extract/job018/note.txt
   - Extract/job018/particles.star
   - Extract/job018/RELION_JOB_EXIT_SUCCESS
   - Extract/job018/run.err
   - Extract/job018/.run.err.tail
   - Extract/job018/run.job
   - Extract/job018/run.out
   - Extract/job018/.run.out.tail
   - Import/job001/default_pipeline.star
   - Import/job001/job_pipeline.star
   - Import/job001/job.star
   - Import/job001/movies.star
   - Import/job001/note.txt
   - Import/job001/RELION_JOB_EXIT_SUCCESS
   - Import/job001/run.err
   - Import/job001/.run.err.tail
   - Import/job001/run.job
   - Import/job001/run.out
   - Import/job001/.run.out.tail
   - InitialModel/job015/default_pipeline.star
   - InitialModel/job015/job_pipeline.star
   - InitialModel/job015/job.star
   - InitialModel/job015/note.txt
   - InitialModel/job015/RELION_JOB_EXIT_SUCCESS
   - InitialModel/job015/run.err
   - InitialModel/job015/.run.err.tail
   - InitialModel/job015/run_it150_data.star
   - InitialModel/job015/run_it150_model.star
   - InitialModel/job015/run_it150_optimiser.star
   - InitialModel/job015/run_it150_sampling.star
   - InitialModel/job015/run.job
   - InitialModel/job015/run.out
   - InitialModel/job015/.run.out.tail
   - LocalRes/job031/default_pipeline.star
   - LocalRes/job031/job_pipeline.star
   - LocalRes/job031/job.star
   - LocalRes/job031/note.txt
   - LocalRes/job031/RELION_JOB_EXIT_SUCCESS
   - LocalRes/job031/relion_locres_fscs.star
   - LocalRes/job031/run.err
   - LocalRes/job031/.run.err.tail
   - LocalRes/job031/run.job
   - LocalRes/job031/run.out
   - LocalRes/job031/.run.out.tail
   - ManualPick/job004/coords_suffix_manualpick.star
   - ManualPick/job004/default_pipeline.star
   - ManualPick/job004/job_pipeline.star
   - ManualPick/job004/job.star
   - ManualPick/job004/micrographs_selected.star
   - ManualPick/job004/Movies/20170629_00021_frameImage_manualpick.star
   - ManualPick/job004/note.txt
   - ManualPick/job004/RELION_JOB_EXIT_SUCCESS
   - ManualPick/job004/run.err
   - ManualPick/job004/.run.err.tail
   - ManualPick/job004/run.job
   - ManualPick/job004/run.out
   - ManualPick/job004/.run.out.tail
   - MaskCreate/job020/default_pipeline.star
   - MaskCreate/job020/job_pipeline.star
   - MaskCreate/job020/job.star
   - MaskCreate/job020/note.txt
   - MaskCreate/job020/RELION_JOB_EXIT_SUCCESS
   - MaskCreate/job020/run.err
   - MaskCreate/job020/.run.err.tail
   - MaskCreate/job020/run.job
   - MaskCreate/job020/run.out
   - MaskCreate/job020/.run.out.tail
   - MotionCorr/job002/corrected_micrographs.star
   - MotionCorr/job002/default_pipeline.star
   - MotionCorr/job002/job_pipeline.star
   - MotionCorr/job002/job.star
   - MotionCorr/job002/Movies/20170629_00021_frameImage.star
   - MotionCorr/job002/Movies/20170629_00022_frameImage.star
   - MotionCorr/job002/Movies/20170629_00023_frameImage.star
   - MotionCorr/job002/Movies/20170629_00024_frameImage.star
   - MotionCorr/job002/Movies/20170629_00025_frameImage.star
   - MotionCorr/job002/Movies/20170629_00026_frameImage.star
   - MotionCorr/job002/Movies/20170629_00027_frameImage.star
   - MotionCorr/job002/Movies/20170629_00028_frameImage.star
   - MotionCorr/job002/Movies/20170629_00029_frameImage.star
   - MotionCorr/job002/Movies/20170629_00030_frameImage.star
   - MotionCorr/job002/Movies/20170629_00031_frameImage.star
   - MotionCorr/job002/Movies/20170629_00035_frameImage.star
   - MotionCorr/job002/Movies/20170629_00036_frameImage.star
   - MotionCorr/job002/Movies/20170629_00037_frameImage.star
   - MotionCorr/job002/Movies/20170629_00039_frameImage.star
   - MotionCorr/job002/Movies/20170629_00040_frameImage.star
   - MotionCorr/job002/Movies/20170629_00042_frameImage.star
   - MotionCorr/job002/Movies/20170629_00043_frameImage.star
   - MotionCorr/job002/Movies/20170629_00044_frameImage.star
   - MotionCorr/job002/Movies/20170629_00045_frameImage.star
   - MotionCorr/job002/Movies/20170629_00046_frameImage.star
   - MotionCorr/job002/Movies/20170629_00047_frameImage.star
   - MotionCorr/job002/Movies/20170629_00048_frameImage.star
   - MotionCorr/job002/Movies/20170629_00049_frameImage.star
   - MotionCorr/job002/note.txt
   - MotionCorr/job002/RELION_JOB_EXIT_SUCCESS
   - MotionCorr/job002/run.err
   - MotionCorr/job002/.run.err.tail
   - MotionCorr/job002/run.job
   - MotionCorr/job002/run.out
   - MotionCorr/job002/.run.out.tail
   - mtf_k2_200kV.star
   - Polish/job027/default_pipeline.star
   - Polish/job027/job_pipeline.star
   - Polish/job027/job.star
   - Polish/job027/note.txt
   - Polish/job027/opt_params_all_groups.txt
   - Polish/job027/RELION_JOB_EXIT_SUCCESS
   - Polish/job027/run.err
   - Polish/job027/.run.err.tail
   - Polish/job027/run.job
   - Polish/job027/run.out
   - Polish/job027/.run.out.tail
   - Polish/job028/bfactors.star
   - Polish/job028/default_pipeline.star
   - Polish/job028/job_pipeline.star
   - Polish/job028/job.star
   - Polish/job028/Movies/20170629_00021_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00022_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00023_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00024_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00025_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00026_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00027_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00028_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00029_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00030_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00031_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00035_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00036_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00037_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00039_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00040_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00042_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00043_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00044_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00045_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00046_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00047_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00048_frameImage_shiny.star
   - Polish/job028/Movies/20170629_00049_frameImage_shiny.star
   - Polish/job028/note.txt
   - Polish/job028/RELION_JOB_EXIT_SUCCESS
   - Polish/job028/run.err
   - Polish/job028/.run.err.tail
   - Polish/job028/run.job
   - Polish/job028/run.out
   - Polish/job028/.run.out.tail
   - Polish/job028/shiny.star
   - PostProcess/job021/default_pipeline.star
   - PostProcess/job021/job_pipeline.star
   - PostProcess/job021/job.star
   - PostProcess/job021/note.txt
   - PostProcess/job021/postprocess_fsc.xml
   - PostProcess/job021/postprocess.star
   - PostProcess/job021/RELION_JOB_EXIT_SUCCESS
   - PostProcess/job021/run.err
   - PostProcess/job021/.run.err.tail
   - PostProcess/job021/run.job
   - PostProcess/job021/run.out
   - PostProcess/job021/.run.out.tail
   - PostProcess/job026/default_pipeline.star
   - PostProcess/job026/job_pipeline.star
   - PostProcess/job026/job.star
   - PostProcess/job026/note.txt
   - PostProcess/job026/postprocess_fsc.xml
   - PostProcess/job026/postprocess.star
   - PostProcess/job026/RELION_JOB_EXIT_SUCCESS
   - PostProcess/job026/run.err
   - PostProcess/job026/.run.err.tail
   - PostProcess/job026/run.job
   - PostProcess/job026/run.out
   - PostProcess/job026/.run.out.tail
   - PostProcess/job030/default_pipeline.star
   - PostProcess/job030/job_pipeline.star
   - PostProcess/job030/job.star
   - PostProcess/job030/note.txt
   - PostProcess/job030/postprocess_fsc.xml
   - PostProcess/job030/postprocess.star
   - PostProcess/job030/RELION_JOB_EXIT_SUCCESS
   - PostProcess/job030/run.err
   - PostProcess/job030/.run.err.tail
   - PostProcess/job030/run.job
   - PostProcess/job030/run.out
   - PostProcess/job030/.run.out.tail
   - Refine3D/job019/default_pipeline.star
   - Refine3D/job019/job_pipeline.star
   - Refine3D/job019/job.star
   - Refine3D/job019/note.txt
   - Refine3D/job019/RELION_JOB_EXIT_SUCCESS
   - Refine3D/job019/run_data.star
   - Refine3D/job019/run.err
   - Refine3D/job019/.run.err.tail
   - Refine3D/job019/run_it020_data.star
   - Refine3D/job019/run_it020_half1_model.star
   - Refine3D/job019/run_it020_half2_model.star
   - Refine3D/job019/run_it020_optimiser.star
   - Refine3D/job019/run_it020_sampling.star
   - Refine3D/job019/run.job
   - Refine3D/job019/run_model.star
   - Refine3D/job019/run.out
   - Refine3D/job019/.run.out.tail
   - Refine3D/job019/run_sampling.star
   - Refine3D/job025/default_pipeline.star
   - Refine3D/job025/job_pipeline.star
   - Refine3D/job025/job.star
   - Refine3D/job025/note.txt
   - Refine3D/job025/RELION_JOB_EXIT_SUCCESS
   - Refine3D/job025/run_data.star
   - Refine3D/job025/run.err
   - Refine3D/job025/.run.err.tail
   - Refine3D/job025/run_it015_data.star
   - Refine3D/job025/run_it015_half1_model.star
   - Refine3D/job025/run_it015_half2_model.star
   - Refine3D/job025/run_it015_optimiser.star
   - Refine3D/job025/run_it015_sampling.star
   - Refine3D/job025/run.job
   - Refine3D/job025/run_model.star
   - Refine3D/job025/run.out
   - Refine3D/job025/.run.out.tail
   - Refine3D/job025/run_sampling.star
   - Refine3D/job029/default_pipeline.star
   - Refine3D/job029/job_pipeline.star
   - Refine3D/job029/job.star
   - Refine3D/job029/note.txt
   - Refine3D/job029/RELION_JOB_EXIT_SUCCESS
   - Refine3D/job029/run_data.star
   - Refine3D/job029/run.err
   - Refine3D/job029/.run.err.tail
   - Refine3D/job029/run_it018_data.star
   - Refine3D/job029/run_it018_half1_model.star
   - Refine3D/job029/run_it018_half2_model.star
   - Refine3D/job029/run_it018_optimiser.star
   - Refine3D/job029/run_it018_sampling.star
   - Refine3D/job029/run.job
   - Refine3D/job029/run_model.star
   - Refine3D/job029/run.out
   - Refine3D/job029/.run.out.tail
   - Refine3D/job029/run_sampling.star
   - Select/job005/default_pipeline.star
   - Select/job005/job_pipeline.star
   - Select/job005/job.star
   - Select/job005/micrographs_selected.star
   - Select/job005/note.txt
   - Select/job005/RELION_JOB_EXIT_SUCCESS
   - Select/job005/run.err
   - Select/job005/.run.err.tail
   - Select/job005/run.job
   - Select/job005/run.out
   - Select/job005/.run.out.tail
   - Select/job009/backup_selection.star
   - Select/job009/class_averages.star
   - Select/job009/default_pipeline.star
   - Select/job009/job_pipeline.star
   - Select/job009/job.star
   - Select/job009/note.txt
   - Select/job009/particles.star
   - Select/job009/RELION_JOB_EXIT_SUCCESS
   - Select/job009/run.err
   - Select/job009/.run.err.tail
   - Select/job009/run.job
   - Select/job009/run.out
   - Select/job009/.run.out.tail
   - Select/job014/backup_selection.star
   - Select/job014/class_averages.star
   - Select/job014/default_pipeline.star
   - Select/job014/job_pipeline.star
   - Select/job014/job.star
   - Select/job014/note.txt
   - Select/job014/particles.star
   - Select/job014/RELION_JOB_EXIT_SUCCESS
   - Select/job014/run.err
   - Select/job014/.run.err.tail
   - Select/job014/run.job
   - Select/job014/run.out
   - Select/job014/.run.out.tail
   - Select/job017/backup_selection.star
   - Select/job017/default_pipeline.star
   - Select/job017/job_pipeline.star
   - Select/job017/job.star
   - Select/job017/note.txt
   - Select/job017/particles.star
   - Select/job017/RELION_JOB_EXIT_SUCCESS
   - Select/job017/run.err
   - Select/job017/.run.err.tail
   - Select/job017/run.job
   - Select/job017/run.out
   - Select/job017/.run.out.tail
   - default_pipeline.star
   - pipeline_PREPROCESS.log
   - pipeline_CLASS2D.log
   - pipeline_INIMODEL.log
   - pipeline_CLASS3D.log
