Index of /data/main/d/drop-seq/2.5.2+dfsg-1/src/java/org/broadinstitute/dropseqrna/utils

• Parent Directory
• AbstractSplitBamClp.java
• AssertSequenceDictionaryIntersection.java
• BaseDistributionAtReadPosition.java
• BaseDistributionMetric.java
• BaseDistributionMetricCollection.java
• BaseQualityFilter.java
• BaseRange.java
• Bases.java
• CellBarcodeSplitBamMetric.java
• CollectionSink.java
• CompareBAMTagValues.java
• ConvertTagToReadGroup.java
• CountChangingIteratorWrapper.java
• CustomBAMIterators.java
• DownsampleBamByTag.java
• DropSeqSamUtil.java
• FastaSequenceFileWriter.java
• FileListParsingUtils.java
• FilterBam.java
• FilterBamByGeneFunction.java
• FilterBamByTag.java
• FilterProgramUtils.java
• FilteredIterator.java
• FilteredReadsMetric.java
• GroupingIterator.java
• IntervalTagComparator.java
• MetricsUtils.java
• MultiComparator.java
• ObjectCounter.java
• ObjectSink.java
• OrderAssertingIterator.java
• OutputWriterUtil.java
• PeekableGroupingIterator.java
• PredicateFilteredIterator.java
• ProgressLoggingIterator.java
• ReadNameComparator.java
• ReportFileUtil.java
• RetainRemoveList.java
• SamHeaderUtil.java
• SamWriterSink.java
• SequenceDictionaryIntersection.java
• SortingCollectionSink.java
• SortingIteratorFactory.java
• SplitBamByCell.java
• SplitBamSummaryMetric.java
• StringInterner.java
• StringTagComparator.java
• TagBam.java
• TagBamWithReadSequenceExtended.java
• TransformingIterator.java
• VCFUtils.java
• ValidateAlignedSam.java
• VariantContextProgressLoggerIterator.java
• VariantContextSingletonFilter.java
• alignmentcomparison/
• editdistance/
• io/
• modularfileparser/
• readiterators/
• readpairs/
• referencetools/
• statistics/