Index of /data/main/f/fastml/3.1-4/programs/gainLoss

• Parent Directory
• BBLEM.algorithmicFlow.txt
• LOG chages.txt
• LpostPerCat.PerSp.txt
• Makefile
• RootFreq.and.Reversibility.MixModels.txt
• ancestralReconstructStates.cpp
• ancestralReconstructStates.h
• bblLS.cpp
• bblLS.h
• classesInherit.costurs.clone.assignment.txt
• computeCorrelations.cpp
• computeCorrelations.h
• computeCountsGL.cpp
• computeCountsGL.h
• computePosteriorExpectationOfChange.cpp
• computePosteriorExpectationOfChange.h
• gainLoss.cpp
• gainLoss.h
• gainLoss.oldFunc_moved2rate4siteGL.txt
• gainLoss.sln
• gainLoss.vcproj
• gainLoss4site.cpp
• gainLoss4site.h
• gainLossAlphabet.cpp
• gainLossAlphabet.h
• gainLossModel.cpp
• gainLossModel.h
• gainLossOptimizer.cpp
• gainLossOptimizer.h
• gainLossOptions.cpp
• gainLossOptions.h
• gainLossProject.cpp
• gainLossUtils.cpp
• gainLossUtils.h
• junk.txt
• likelihoodClasses.suffStat.computeUp.computeDown.txt
• optimizeGainLossModel.cpp
• optimizeGainLossModel.h
• optimizeGainLossModelVV.cpp
• optimizeGainLossModelVV.h
• rate4Triad.cpp
• rate4Triad.h
• rate4site.gainLossFunctions.txt
• rate4siteGL.cpp
• rate4siteGL.h
• runPerlReadSimResAllModels.PerBranchAndPerPos.andMP.TarRm.Bash
• sankoffReconstructGL.cpp
• sankoffReconstructGL.h
• simulateChangesAlongTree.cpp
• simulateChangesAlongTree.h
• simulateOnePos.cpp
• simulateOnePos.h
• siteSpecificGL.cpp
• siteSpecificGL.h
• stochasticProcessLayers.txt