Description: fix FTBFS in makefiles
Author: Drew Parsons <dparsons@debian.org>

Index: gerris-snapshot-131206/doc/Makefile.in
===================================================================
--- gerris-snapshot-131206.orig/doc/Makefile.in
+++ gerris-snapshot-131206/doc/Makefile.in
@@ -64,9 +64,14 @@ CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES =
 CONFIG_CLEAN_VPATH_FILES =
 PROGRAMS = $(noinst_PROGRAMS)
-autoclass_SOURCES = autoclass.c
-autoclass_OBJECTS = autoclass.$(OBJEXT)
-autoclass_LDADD = $(LDADD)
+am_autoclass_OBJECTS = autoclass-autoclass.$(OBJEXT) \
+	autoclass-init.$(OBJEXT)
+autoclass_OBJECTS = $(am_autoclass_OBJECTS)
+am__DEPENDENCIES_1 =
+autoclass_DEPENDENCIES = $(am__DEPENDENCIES_1)
+autoclass_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) \
+	$(LIBTOOLFLAGS) --mode=link $(CCLD) $(autoclass_CFLAGS) \
+	$(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
 DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
 depcomp = $(SHELL) $(top_srcdir)/depcomp
 am__depfiles_maybe = depfiles
@@ -80,8 +85,8 @@ CCLD = $(CC)
 LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
 	--mode=link $(CCLD) $(AM_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
 	$(LDFLAGS) -o $@
-SOURCES = autoclass.c
-DIST_SOURCES = autoclass.c
+SOURCES = $(autoclass_SOURCES)
+DIST_SOURCES = $(autoclass_SOURCES)
 RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
 	html-recursive info-recursive install-data-recursive \
 	install-dvi-recursive install-exec-recursive \
@@ -285,6 +290,10 @@ EXTRA_DIST = figures share doxy.conf ger
 INCLUDES = -I$(top_srcdir)/src -I$(includedir) -DG_LOG_DOMAIN=\"Gfs-tools\"\
             $(GTS_CFLAGS)
 
+autoclass_SOURCES = autoclass.c $(top_srcdir)/src/init.c
+autoclass_CFLAGS = $(AM_CFLAGS) -DFTT_2D=1
+autoclass_CPPFLAGS = $(INCLUDES) -I$(top_builddir)/src
+autoclass_LDADD = $(GFS2D_LIBS)
 all: all-recursive
 
 .SUFFIXES:
@@ -328,6 +337,9 @@ clean-noinstPROGRAMS:
 	list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
 	echo " rm -f" $$list; \
 	rm -f $$list
+autoclass$(EXEEXT): $(autoclass_OBJECTS) $(autoclass_DEPENDENCIES) 
+	@rm -f autoclass$(EXEEXT)
+	$(autoclass_LINK) $(autoclass_OBJECTS) $(autoclass_LDADD) $(LIBS)
 
 mostlyclean-compile:
 	-rm -f *.$(OBJEXT)
@@ -335,7 +347,8 @@ mostlyclean-compile:
 distclean-compile:
 	-rm -f *.tab.c
 
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/autoclass.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/autoclass-autoclass.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/autoclass-init.Po@am__quote@
 
 .c.o:
 @am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@@ -358,6 +371,34 @@ distclean-compile:
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
 
+autoclass-autoclass.o: autoclass.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -MT autoclass-autoclass.o -MD -MP -MF $(DEPDIR)/autoclass-autoclass.Tpo -c -o autoclass-autoclass.o `test -f 'autoclass.c' || echo '$(srcdir)/'`autoclass.c
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/autoclass-autoclass.Tpo $(DEPDIR)/autoclass-autoclass.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='autoclass.c' object='autoclass-autoclass.o' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -c -o autoclass-autoclass.o `test -f 'autoclass.c' || echo '$(srcdir)/'`autoclass.c
+
+autoclass-autoclass.obj: autoclass.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -MT autoclass-autoclass.obj -MD -MP -MF $(DEPDIR)/autoclass-autoclass.Tpo -c -o autoclass-autoclass.obj `if test -f 'autoclass.c'; then $(CYGPATH_W) 'autoclass.c'; else $(CYGPATH_W) '$(srcdir)/autoclass.c'; fi`
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/autoclass-autoclass.Tpo $(DEPDIR)/autoclass-autoclass.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='autoclass.c' object='autoclass-autoclass.obj' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -c -o autoclass-autoclass.obj `if test -f 'autoclass.c'; then $(CYGPATH_W) 'autoclass.c'; else $(CYGPATH_W) '$(srcdir)/autoclass.c'; fi`
+
+autoclass-init.o: $(top_srcdir)/src/init.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -MT autoclass-init.o -MD -MP -MF $(DEPDIR)/autoclass-init.Tpo -c -o autoclass-init.o `test -f '$(top_srcdir)/src/init.c' || echo '$(srcdir)/'`$(top_srcdir)/src/init.c
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/autoclass-init.Tpo $(DEPDIR)/autoclass-init.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$(top_srcdir)/src/init.c' object='autoclass-init.o' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -c -o autoclass-init.o `test -f '$(top_srcdir)/src/init.c' || echo '$(srcdir)/'`$(top_srcdir)/src/init.c
+
+autoclass-init.obj: $(top_srcdir)/src/init.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -MT autoclass-init.obj -MD -MP -MF $(DEPDIR)/autoclass-init.Tpo -c -o autoclass-init.obj `if test -f '$(top_srcdir)/src/init.c'; then $(CYGPATH_W) '$(top_srcdir)/src/init.c'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/init.c'; fi`
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/autoclass-init.Tpo $(DEPDIR)/autoclass-init.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$(top_srcdir)/src/init.c' object='autoclass-init.obj' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(autoclass_CPPFLAGS) $(CPPFLAGS) $(autoclass_CFLAGS) $(CFLAGS) -c -o autoclass-init.obj `if test -f '$(top_srcdir)/src/init.c'; then $(CYGPATH_W) '$(top_srcdir)/src/init.c'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/init.c'; fi`
+
 mostlyclean-libtool:
 	-rm -f *.lo
 
@@ -679,10 +720,6 @@ uninstall-am:
 	uninstall uninstall-am
 
 
-autoclass: autoclass.c $(top_srcdir)/src/init.c
-	$(LIBTOOL) --mode=link $(CC) $(AM_CFLAGS) $(INCLUDES) -DFTT_2D=1 \
-	autoclass.c -o autoclass $(GFS2D_LIBS)
-
 reference: Makefile.am autoclass share/autoclass.sh share/doxfilter share/renamemodules doxy.conf
 	sh share/autoclass.sh | sort -k2,3 | ./autoclass > hierarchy.c
 	@chmod +x share/doxfilter
Index: gerris-snapshot-131206/doc/examples/Makefile.in
===================================================================
--- gerris-snapshot-131206.orig/doc/examples/Makefile.in
+++ gerris-snapshot-131206/doc/examples/Makefile.in
@@ -68,12 +68,19 @@ CONFIG_HEADER = $(top_builddir)/config.h
 CONFIG_CLEAN_FILES = gfs2doc gfs-highlight crossref.sh
 CONFIG_CLEAN_VPATH_FILES =
 PROGRAMS = $(noinst_PROGRAMS)
-classes_SOURCES = classes.c
-classes_OBJECTS = classes.$(OBJEXT)
-classes_LDADD = $(LDADD)
-modules_SOURCES = modules.c
-modules_OBJECTS = modules.$(OBJEXT)
-modules_LDADD = $(LDADD)
+am_classes_OBJECTS = classes-classes.$(OBJEXT) classes-init.$(OBJEXT)
+classes_OBJECTS = $(am_classes_OBJECTS)
+am__DEPENDENCIES_1 =
+classes_DEPENDENCIES = $(am__DEPENDENCIES_1)
+classes_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+	--mode=link $(CCLD) $(classes_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+	$(LDFLAGS) -o $@
+am_modules_OBJECTS = modules-modules.$(OBJEXT)
+modules_OBJECTS = $(am_modules_OBJECTS)
+modules_DEPENDENCIES = $(am__DEPENDENCIES_1)
+modules_LINK = $(LIBTOOL) --tag=CC $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) \
+	--mode=link $(CCLD) $(modules_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
+	$(LDFLAGS) -o $@
 am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
 am__vpath_adj = case $$p in \
     $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
@@ -605,6 +612,14 @@ EXAMPLES = cylinder rt boussinesq logo c
 INCLUDES = -I$(top_srcdir)/src -I$(includedir) -DG_LOG_DOMAIN=\"Gfs-tools\"\
             $(GTS_CFLAGS)
 
+classes_SOURCES = classes.c $(top_srcdir)/src/init.c
+classes_CFLAGS = $(AM_CFLAGS) -DFTT_2D=1
+classes_CPPFLAGS = $(INCLUDES) -I$(top_builddir)/src
+classes_LDADD = $(GFS2D_LIBS)
+modules_SOURCES = modules.c
+modules_CFLAGS = $(AM_CFLAGS) -DFTT_2D=1
+modules_CPPFLAGS = $(INCLUDES)
+modules_LDADD = $(GFS2D_LIBS)
 all: $(BUILT_SOURCES)
 	$(MAKE) $(AM_MAKEFLAGS) all-am
 
@@ -656,6 +671,12 @@ clean-noinstPROGRAMS:
 	list=`for p in $$list; do echo "$$p"; done | sed 's/$(EXEEXT)$$//'`; \
 	echo " rm -f" $$list; \
 	rm -f $$list
+classes$(EXEEXT): $(classes_OBJECTS) $(classes_DEPENDENCIES) 
+	@rm -f classes$(EXEEXT)
+	$(classes_LINK) $(classes_OBJECTS) $(classes_LDADD) $(LIBS)
+modules$(EXEEXT): $(modules_OBJECTS) $(modules_DEPENDENCIES) 
+	@rm -f modules$(EXEEXT)
+	$(modules_LINK) $(modules_OBJECTS) $(modules_LDADD) $(LIBS)
 install-binSCRIPTS: $(bin_SCRIPTS)
 	@$(NORMAL_INSTALL)
 	@list='$(bin_SCRIPTS)'; test -n "$(bindir)" || list=; \
@@ -698,8 +719,9 @@ mostlyclean-compile:
 distclean-compile:
 	-rm -f *.tab.c
 
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/classes.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/modules.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/classes-classes.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/classes-init.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/modules-modules.Po@am__quote@
 
 .c.o:
 @am__fastdepCC_TRUE@	$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@@ -722,6 +744,48 @@ distclean-compile:
 @AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
 @am__fastdepCC_FALSE@	$(LTCOMPILE) -c -o $@ $<
 
+classes-classes.o: classes.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -MT classes-classes.o -MD -MP -MF $(DEPDIR)/classes-classes.Tpo -c -o classes-classes.o `test -f 'classes.c' || echo '$(srcdir)/'`classes.c
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/classes-classes.Tpo $(DEPDIR)/classes-classes.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='classes.c' object='classes-classes.o' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -c -o classes-classes.o `test -f 'classes.c' || echo '$(srcdir)/'`classes.c
+
+classes-classes.obj: classes.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -MT classes-classes.obj -MD -MP -MF $(DEPDIR)/classes-classes.Tpo -c -o classes-classes.obj `if test -f 'classes.c'; then $(CYGPATH_W) 'classes.c'; else $(CYGPATH_W) '$(srcdir)/classes.c'; fi`
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/classes-classes.Tpo $(DEPDIR)/classes-classes.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='classes.c' object='classes-classes.obj' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -c -o classes-classes.obj `if test -f 'classes.c'; then $(CYGPATH_W) 'classes.c'; else $(CYGPATH_W) '$(srcdir)/classes.c'; fi`
+
+classes-init.o: $(top_srcdir)/src/init.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -MT classes-init.o -MD -MP -MF $(DEPDIR)/classes-init.Tpo -c -o classes-init.o `test -f '$(top_srcdir)/src/init.c' || echo '$(srcdir)/'`$(top_srcdir)/src/init.c
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/classes-init.Tpo $(DEPDIR)/classes-init.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$(top_srcdir)/src/init.c' object='classes-init.o' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -c -o classes-init.o `test -f '$(top_srcdir)/src/init.c' || echo '$(srcdir)/'`$(top_srcdir)/src/init.c
+
+classes-init.obj: $(top_srcdir)/src/init.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -MT classes-init.obj -MD -MP -MF $(DEPDIR)/classes-init.Tpo -c -o classes-init.obj `if test -f '$(top_srcdir)/src/init.c'; then $(CYGPATH_W) '$(top_srcdir)/src/init.c'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/init.c'; fi`
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/classes-init.Tpo $(DEPDIR)/classes-init.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='$(top_srcdir)/src/init.c' object='classes-init.obj' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(classes_CPPFLAGS) $(CPPFLAGS) $(classes_CFLAGS) $(CFLAGS) -c -o classes-init.obj `if test -f '$(top_srcdir)/src/init.c'; then $(CYGPATH_W) '$(top_srcdir)/src/init.c'; else $(CYGPATH_W) '$(srcdir)/$(top_srcdir)/src/init.c'; fi`
+
+modules-modules.o: modules.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(modules_CPPFLAGS) $(CPPFLAGS) $(modules_CFLAGS) $(CFLAGS) -MT modules-modules.o -MD -MP -MF $(DEPDIR)/modules-modules.Tpo -c -o modules-modules.o `test -f 'modules.c' || echo '$(srcdir)/'`modules.c
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/modules-modules.Tpo $(DEPDIR)/modules-modules.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='modules.c' object='modules-modules.o' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(modules_CPPFLAGS) $(CPPFLAGS) $(modules_CFLAGS) $(CFLAGS) -c -o modules-modules.o `test -f 'modules.c' || echo '$(srcdir)/'`modules.c
+
+modules-modules.obj: modules.c
+@am__fastdepCC_TRUE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(modules_CPPFLAGS) $(CPPFLAGS) $(modules_CFLAGS) $(CFLAGS) -MT modules-modules.obj -MD -MP -MF $(DEPDIR)/modules-modules.Tpo -c -o modules-modules.obj `if test -f 'modules.c'; then $(CYGPATH_W) 'modules.c'; else $(CYGPATH_W) '$(srcdir)/modules.c'; fi`
+@am__fastdepCC_TRUE@	$(am__mv) $(DEPDIR)/modules-modules.Tpo $(DEPDIR)/modules-modules.Po
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	source='modules.c' object='modules-modules.obj' libtool=no @AMDEPBACKSLASH@
+@AMDEP_TRUE@@am__fastdepCC_FALSE@	DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
+@am__fastdepCC_FALSE@	$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(modules_CPPFLAGS) $(CPPFLAGS) $(modules_CFLAGS) $(CFLAGS) -c -o modules-modules.obj `if test -f 'modules.c'; then $(CYGPATH_W) 'modules.c'; else $(CYGPATH_W) '$(srcdir)/modules.c'; fi`
+
 mostlyclean-libtool:
 	-rm -f *.lo
 
@@ -1140,7 +1204,7 @@ uninstall-am: uninstall-binSCRIPTS unins
 
 
 gerris.dic: classes modulesyms.sh $(top_srcdir)/modules/Makefile.am modules.list
-	($(srcdir)/classes && sh $(srcdir)/modulesyms.sh $(top_srcdir)/modules $(pkglibdir)) | sort > gerris.dic
+	($(builddir)/classes && sh $(srcdir)/modulesyms.sh $(top_srcdir)/modules $(pkglibdir)) | sort > gerris.dic
 
 gfs.lang: gerris.dic
 	echo "# Language file for source-highlight" > gfs.lang
@@ -1151,7 +1215,7 @@ gfs.lang: gerris.dic
 	echo "redef preproc = \"C preprocessor command is not compatible with the use of # as comment character in GTS\"" >> gfs.lang
 
 modules.list: modules $(top_srcdir)/modules/Makefile.am
-	$(srcdir)/modules $(top_srcdir)/modules/*.la $(pkglibdir)/*.so | sort | uniq > modules.list
+	$(builddir)/modules $(top_srcdir)/modules/*.la $(pkglibdir)/*.so | sort | uniq > modules.list
 
 gfs-keywords.el: gerris.dic modules.list
 	echo "(defvar gfs-abbrevs '(" > gfs-keywords.el
@@ -1165,7 +1229,7 @@ gfs-keywords.el: gerris.dic modules.list
 	echo "(provide 'gfs-keywords)" >> gfs-keywords.el
 
 gfs.php: gerris.dic modules.list gfs.php.sh
-	sh gfs.php.sh > gfs.php
+	sh $(srcdir)/gfs.php.sh > gfs.php
 
 gfs2doc: gfs2doc.in
 
@@ -1381,14 +1445,6 @@ examples.tar.gz: examples.pdf examples $
 	tar czf examples.tar.gz examples $(DOCS)
 	rm -r -f examples
 
-classes: classes.c $(top_srcdir)/src/init.c
-	$(LIBTOOL) --mode=link $(CC) $(AM_CFLAGS) $(INCLUDES) -DFTT_2D=1 \
-	classes.c -o classes $(GFS2D_LIBS)
-
-modules: modules.c
-	$(LIBTOOL) --mode=link $(CC) $(AM_CFLAGS) $(INCLUDES) -DFTT_2D=1 \
-	modules.c -o modules $(GFS2D_LIBS)
-
 publish: examples.tar.gz
 	cp examples.tar.gz $(WEBROOT)/examples
 	cd $(WEBROOT)/examples && tar xzf examples.tar.gz && rm -f examples.tar.gz
