branch_bracket_width 0.5 branch_bracket_depth 0.75 class1 clade_marker_color #FF0000 class1 clade_marker_size 35 class1 class_label Genomes containing gene X class2 clade_marker_color #0000FF class2 clade_marker_size 35 class2 annotation_background_color #0000FF class2 class_label Clades in which X is a core gene clade_marker_size 10 branch_thickness 0.5 Bacill.Bacillale class class1 Bacill.Bacillale.Staphylococcaceae.Gemella class class1 Bacill.Bacillale.Staphylococcaceae.Jeotgalicoccus class class1 Bacill.Bacillale.Staphylococcaceae.Macrococcus class class1 Bacill.Bacillale.Staphylococcaceae.Nosocomiicoccus class class1 Bacill.Bacillale.Staphylococcaceae.Salinicoccus class class1 Bacill.Bacillale.Staphylococcaceae.Staphylococcus class class1 Bacill.Bacillale.Staphylococcaceae.unclassified class class1 Bacill.Bacillale.Staphylococcaceae.Macrococcus class class1 Bacill.Bacillale.unclassified class class1 Bacill.Bacillale.Thermoactinomycetaceae.Planifilum class class1 Bacill.Bacillale.Thermoactinomycetaceae.Thermoactinomyces class class1 Bacill.Bacillale.Thermoactinomycetaceae.unclassified class class1 Bacilli.Lactobacillales.Aerococcaceae.Eremococcus class class1 Bacilli.Lactobacillales.Aerococcaceae.Facklamia class class1 Bacilli.Lactobacillales.Carnobacteriaceae.Alloiococcus class class1 Bacilli.Lactobacillales.Carnobacteriaceae.Carnobacterium class class1 Bacilli.Lactobacillales.Carnobacteriaceae.Desemzia class class1 Bacilli.Lactobacillales.Lactobacillaceae.Lactobacillus class class1 Bacilli.Lactobacillales.Lactobacillaceae.Pediococcus class class1 Clostrid.Clostridiales.Lachnospiraceae.Dorea class class1 Clostridia.Clostridiales.Incertae_Sedis_XI.Finegoldia class class1 Clostridia.Clostridiales.Incertae_Sedis_XI.Gallicola class class1 Clostridia.Clostridiales.Incertae_Sedis_XI.Helcococcus class class1 Clostridia.Clostridiales.Incertae_Sedis_XI.Peptoniphilus class class1 Clostridia.Clostridiales.Incertae_Sedis_XVIII.Symbiobacterium class class1 Clostrid.Clostridiales.Lachnospiraceae.Butyrivibrio class class1 Clostrid.Clostridiales.Lachnospiraceae.Coprococcus class class1 Clostrid.Clostridiales.Lachnospiraceae.Oribacterium class class1 Clostrid.Clostridiales.Lachnospiraceae.Parasporobacterium class class1 Bacilli.Lactobacillales.Aerococcaceae.Globicatella class class1 Clostridi.Clostridiales.Ruminococcaceae.Butyricicoccus class class1 Clostridi.Clostridiales.Ruminococcaceae.Papillibacter class class1 Clostridi.Clostridiale.Veillonellaceae.Selenomonas class class1 Clostrid.Clostridiales.Peptostreptococcaceae.Filifactor class class1 Clostridi.Clostridiale.Veillonellaceae.Sporomusa class class1 Clostridia.Thermoanaerobacterales.Thermoanaerobacteraceae.Thermoanaerobacterium class class1 Clostrid.Clostridiales.Peptostreptococcaceae.Sporacetigenium class class1 Clostrid.Clostridiales.Lachnospiraceae.Roseburia class class1 Clostrid.Clostridiales.Lachnospiraceae.Shuttleworthia class class1 Bacill.Bacillale.Staphylococcaceae class class2 Bacill.Bacillale.Thermoactinomycetaceae class class2 Bacill.Bacillale class class2 #Bacill.Bacillale annotation_background_color #0000FF Bacill.Bacillale annotation Y: X is a clade-specific core gene for clade X Bacill.Bacillale.Staphylococcaceae annotation Z: X is a core gene in clade Z Bacill.Bacillale.Thermoactinomycetaceae annotation K: X is a core gene in clade X