Author: Andreas Tille <tille@debian.org>
Last-Update: 2022-09-29
Origin: https://lists.debian.org/debian-med/2022/09/msg00053.html
Description: Make sure all symbols of libhts will be really found
FIXME: It would be more elegant to specify libhts.a at the *correct* position rather than force it twice.
       Even better would be dynamic linking since we are creating libhts.so as well

Index: htslib/Makefile
===================================================================
--- htslib.orig/Makefile
+++ htslib/Makefile
@@ -556,13 +556,13 @@ annot-tsv: annot-tsv.o libhts.a
 	$(CC) $(LDFLAGS) -o $@ annot-tsv.o libhts.a $(LIBS) -lpthread
 
 bgzip: bgzip.o libhts.a
-	$(CC) $(LDFLAGS) -o $@ bgzip.o libhts.a $(LIBS) -lpthread
+	$(CC) $(LDFLAGS) -o $@ bgzip.o libhts.a $(LIBS) libhts.a -lpthread
 
 htsfile: htsfile.o libhts.a
-	$(CC) $(LDFLAGS) -o $@ htsfile.o libhts.a $(LIBS) -lpthread
+	$(CC) $(LDFLAGS) -o $@ htsfile.o libhts.a $(LIBS) libhts.a -lpthread
 
 tabix: tabix.o libhts.a
-	$(CC) $(LDFLAGS) -o $@ tabix.o libhts.a $(LIBS) -lpthread
+	$(CC) $(LDFLAGS) -o $@ tabix.o libhts.a $(LIBS) libhts.a -lpthread
 
 ref_cache/ref-cache: $(REF_CACHE_OBJS)
 	$(CC) $(LDFLAGS) $(REF_CACHE_EXTRA_LD_FLAGS) -o $@ $(REF_CACHE_OBJS) -lcurl