Description: inject Debian build options Author: Étienne Mollier Forwarded: not-needed Last-Update: 2021-08-28 --- This patch header follows DEP-3: http://dep.debian.net/deps/dep3/ --- ivar.orig/src/Makefile.am +++ ivar/src/Makefile.am @@ -1,6 +1,6 @@ LIBS = -lhts -lz -lpthread -CXXFLAGS = -v -g -std=c++11 -Wall -Wextra -Werror +CXXFLAGS += -v -g -std=c++11 -Wall -Wextra -Werror # this lists the binaries to produce, the (non-PHONY, binary) targets in # the previous manual Makefile --- ivar.orig/tests/Makefile.am +++ ivar/tests/Makefile.am @@ -1,6 +1,6 @@ LIBS = -lhts -lz -lpthread -CXXFLAGS = -g -std=c++11 -Wall -Wextra -Werror +CXXFLAGS += -g -std=c++11 -Wall -Wextra -Werror TESTS = check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_PROGRAMS = check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search @@ -21,4 +21,4 @@ check_primer_trim_edge_cases_SOURCES = test_primer_trim_edge_cases.cpp ../src/trim_primer_quality.cpp ../src/primer_bed.cpp ../src/interval_tree.cpp check_isize_trim_SOURCES = test_isize_trim.cpp ../src/trim_primer_quality.cpp ../src/primer_bed.cpp ../src/interval_tree.cpp check_interval_tree_SOURCES = test_interval_tree.cpp ../src/primer_bed.cpp ../src/interval_tree.cpp -check_amplicon_search_SOURCES = test_amplicon_search.cpp ../src/trim_primer_quality.cpp ../src/primer_bed.cpp ../src/interval_tree.cpp \ No newline at end of file +check_amplicon_search_SOURCES = test_amplicon_search.cpp ../src/trim_primer_quality.cpp ../src/primer_bed.cpp ../src/interval_tree.cpp