Description: removing tests that use the network, the GUI or non-existing files
Author: Pierre Gruet <pgt@debian.org>
Forwarded: not-needed
Last-Update: 2021-07-27

--- a/build.gradle
+++ b/build.gradle
@@ -1707,12 +1707,72 @@
   dependsOn compileJava //?
 
   useTestNG() {
-    includeGroups testng_groups
-    excludeGroups testng_excluded_groups
+    //includeGroups "Functional"
+    excludeGroups "Network"
     preserveOrder true
     useDefaultListeners=true
   }
 
+  include '**/AtomSpecModelTest.class'
+  include '**/AtomSpecTest.class'
+  include '**/ClustalFileTest.class'
+  include '**/ConcurrentModificationTest.class'
+  include '**/ConditionTest.class'
+  include '**/CustomUrlProviderTest.class'
+  include '**/DesktopUrlProviderFactoryTest.class'
+  include '**/EmblFlatFileTest.class'
+  include '**/EmblXmlSourceTest.class'
+  include '**/EnsemblRestClientTest.class'
+  include '**/FeatureAttributesTest.class'
+  include '**/FeatureMatcherSetTest.class'
+  include '**/FeatureMatcherTest.class'
+  include '**/FeatureStoreTest.class'
+  include '**/FileFormatsTest.class'
+  include '**/FileLoaderTest.class'
+  include '**/GeneticCodesTest.class'
+  include '**/HiddenColumnsCursorTest.class'
+  include '**/HiddenColumnsTest.class'
+  include '**/IdentifiersUrlProviderTest.class'
+  include '**/JalviewColourSchemeTest.class'
+  include '**/JalviewFileViewTest.class'
+  include '**/JSONUtilsTest.class'
+  include '**/JvCacheableInputBoxTest.class'
+  include '**/MappedFeaturesTest.class'
+  include '**/MatcherTest.class'
+  include '**/MathUtilsTest.class'
+  include '**/MatrixTest.class'
+  include '**/MemorySettingTest.class'
+  include '**/MessageManagerTest.class'
+  include '**/OverviewDimensionsHideHiddenTest.class'
+  include '**/OverviewDimensionsShowHiddenTest.class'
+  include '**/PfamFullTest.class'
+  include '**/PfamSeedTest.class'
+  include '**/PIDModelTest.class'
+  include '**/RangeElementsIteratorTest.class'
+  include '**/RemoteFormatTest.class'
+  include '**/RfamFullTest.class'
+  include '**/RfamSeedTest.class'
+  include '**/RotatableMatrixTest.class'
+  include '**/ScoreMatrixFileTest.class'
+  include '**/ScoreMatrixTest.class'
+  include '**/ScoreModelsTest.class'
+  include '**/SequenceFeaturesTest.class'
+  include '**/SequenceOntologyLiteTest.class'
+  include '**/SparseDoubleArrayTest.class'
+  include '**/SparseMatrixTest.class'
+  include '**/SpeciesTest.class'
+  include '**/StartRegionIteratorTest.class'
+  include '**/StructureMappingTest.class'
+  include '**/UrlDownloadClientTest.class'
+  include '**/UrlLinkDisplayTest.class'
+  include '**/UrlLinkTableModelTest.class'
+  include '**/UrlProviderTest.class'
+  include '**/VCFReaderTest.class'
+  include '**/ViewportRangesTest.class'
+  include '**/VisibleContigsIteratorTest.class'
+  include '**/VisibleRowsIteratorTest.class'
+  exclude 'jalview/gui/**'
+
   maxHeapSize = "1024m"
 
   workingDir = jalviewDir
--- a/test/jalview/ext/htsjdk/VCFReaderTest.java
+++ b/test/jalview/ext/htsjdk/VCFReaderTest.java
@@ -135,7 +135,7 @@
    * 
    * @throws IOException
    */
-  @Test
+  //@Test
   public void testQuery_indexed() throws IOException
   {
     /*