Description: enforce linking of -lrt -lpthread
 This patch makes sure that these get linked even though they might
 be missing in $SEQAN_LIBRARIES (until this is fixed in libseqan2-dev).
Author: Sascha Steinbiss <satta@debian.org>
--- lambda-align.orig/src/CMakeLists.txt
+++ lambda-align/src/CMakeLists.txt
@@ -229,11 +229,11 @@
                     mkindex_saca.hpp)
 
 add_executable (lambda2 ${LAMBDA_SOURCE_FILES})
-target_link_libraries (lambda2 ${SEQAN_LIBRARIES})
+target_link_libraries (lambda2 ${SEQAN_LIBRARIES} rt pthread)
 
 if (LAMBDA_MULTIOPT_BUILD)
     add_executable (lambda2-sse4 ${LAMBDA_SOURCE_FILES})
-    target_link_libraries (lambda2-sse4 ${SEQAN_LIBRARIES})
+    target_link_libraries (lambda2-sse4 ${SEQAN_LIBRARIES} rt pthread)
     set_target_properties (lambda2-sse4 PROPERTIES COMPILE_FLAGS "-mmmx -msse -msse2 -msse3 -mssse3 -msse4 -mpopcnt")
 endif ()