Index of /data/main/l/last-align/830-1/src

• Parent Directory
• Alignment.cc
• Alignment.hh
• AlignmentPot.cc
• AlignmentPot.hh
• AlignmentWrite.cc
• Alphabet.cc
• Alphabet.hh
• CA_code/
• Centroid.cc
• Centroid.hh
• CyclicSubsetSeed.cc
• CyclicSubsetSeed.hh
• CyclicSubsetSeedData.hh
• DiagonalTable.cc
• DiagonalTable.hh
• GappedXdropAligner.cc
• GappedXdropAligner.hh
• GappedXdropAligner2qual.cc
• GappedXdropAligner3frame.cc
• GappedXdropAligner3framePssm.cc
• GappedXdropAlignerInl.hh
• GappedXdropAlignerPssm.cc
• GeneralizedAffineGapCosts.cc
• GeneralizedAffineGapCosts.hh
• GeneticCode.cc
• GeneticCode.hh
• GreedyXdropAligner.cc
• GreedyXdropAligner.hh
• LambdaCalculator.cc
• LambdaCalculator.hh
• LastEvaluer.cc
• LastEvaluer.hh
• LastalArguments.cc
• LastalArguments.hh
• LastdbArguments.cc
• LastdbArguments.hh
• Mmap.hh
• MultiSequence.cc
• MultiSequence.hh
• MultiSequenceQual.cc
• OneQualityScoreMatrix.cc
• OneQualityScoreMatrix.hh
• QualityPssmMaker.cc
• QualityPssmMaker.hh
• ScoreMatrix.cc
• ScoreMatrix.hh
• ScoreMatrixData.hh
• ScoreMatrixRow.hh
• SegmentPair.cc
• SegmentPair.hh
• SegmentPairPot.cc
• SegmentPairPot.hh
• SequenceFormat.hh
• SubsetMinimizerFinder.cc
• SubsetMinimizerFinder.hh
• SubsetSuffixArray.cc
• SubsetSuffixArray.hh
• SubsetSuffixArraySearch.cc
• SubsetSuffixArraySort.cc
• TantanMasker.cc
• TantanMasker.hh
• TwoQualityScoreMatrix.cc
• TwoQualityScoreMatrix.hh
• VectorOrMmap.hh
• alp/
• fileMap.cc
• fileMap.hh
• gaplessPssmXdrop.cc
• gaplessPssmXdrop.hh
• gaplessTwoQualityXdrop.cc
• gaplessTwoQualityXdrop.hh
• gaplessXdrop.cc
• gaplessXdrop.hh
• gumbel_params/
• io.cc
• io.hh
• last-merge-batches.c
• last-pair-probs-main.cc
• last-pair-probs.cc
• last-pair-probs.hh
• lastal.cc
• lastdb.cc
• makefile
• qualityScoreUtil.hh
• split/
• stringify.hh
• tantan.cc
• tantan.hh
• threadUtil.hh
• version.hh