Index: libevocosm.git/Makefile.am
===================================================================
--- libevocosm.git.orig/Makefile.am	2011-11-28 20:27:40.000000000 -0700
+++ libevocosm.git/Makefile.am	2011-11-28 20:42:09.000000000 -0700
@@ -1,13 +1,8 @@
 ACLOCAL_AMFLAGS = -I m4
 
-if HAVE_DOXYGEN
 DOC_DIR = docs
-else
-DOC_DIR =
-endif
 
-#SUBDIRS = libevocosm examples/function_optimization examples/prisoners_dilemma $(DOC_DIR)
-SUBDIRS = libevocosm examples/function_optimization examples/prisoners_dilemma
+SUBDIRS = libevocosm examples/function_optimization examples/prisoners_dilemma $(DOC_DIR)
 
 EXTRA_DIST = LicenseOpenSource.txt LicenseClosedSource.txt reconf cleanup
 
Index: libevocosm.git/configure.ac
===================================================================
--- libevocosm.git.orig/configure.ac	2011-11-28 19:41:12.000000000 -0700
+++ libevocosm.git/configure.ac	2011-11-28 20:42:38.000000000 -0700
@@ -53,4 +53,4 @@
     AM_CONDITIONAL(HAVE_DOXYGEN, "false")
 fi
 
-AC_OUTPUT(Makefile libevocosm.pc libevocosm/Makefile examples/function_optimization/Makefile examples/prisoners_dilemma/Makefile)
+AC_OUTPUT(Makefile libevocosm.pc libevocosm/Makefile examples/function_optimization/Makefile examples/prisoners_dilemma/Makefile docs/Makefile)