# Generated by the protocol buffer compiler. DO NOT EDIT! # source: BaseInformationRecords.proto import sys _b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1')) from google.protobuf import descriptor as _descriptor from google.protobuf import message as _message from google.protobuf import reflection as _reflection from google.protobuf import symbol_database as _symbol_database from google.protobuf import descriptor_pb2 # @@protoc_insertion_point(imports) _sym_db = _symbol_database.Default() DESCRIPTOR = _descriptor.FileDescriptor( name='BaseInformationRecords.proto', package='org.campagnelab.dl.varanalysis.protobuf', syntax='proto2', serialized_pb=_b('\n\x1c\x42\x61seInformationRecords.proto\x12\'org.campagnelab.dl.varanalysis.protobuf\"f\n\x19\x42\x61seInformationCollection\x12I\n\x07records\x18\x01 \x03(\x0b\x32\x38.org.campagnelab.dl.varanalysis.protobuf.BaseInformation\"\xf2\x02\n\x0f\x42\x61seInformation\x12\x17\n\x0freference_index\x18\x01 \x02(\r\x12\x14\n\x0creference_id\x18\n 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_descriptor.Descriptor( name='BaseInformationCollection', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformationCollection', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='records', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformationCollection.records', index=0, number=1, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=73, serialized_end=175, ) _BASEINFORMATION = _descriptor.Descriptor( name='BaseInformation', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='reference_index', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.reference_index', index=0, number=1, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='reference_id', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.reference_id', index=1, number=10, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='position', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.position', index=2, number=2, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='mutated', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.mutated', index=3, number=3, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='mutatedBase', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.mutatedBase', index=4, number=4, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='indexOfMutatedBase', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.indexOfMutatedBase', index=5, number=7, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='frequencyOfMutation', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.frequencyOfMutation', index=6, number=6, type=2, cpp_type=6, label=1, has_default_value=False, default_value=float(0), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='referenceBase', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.referenceBase', index=7, number=5, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='samples', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.samples', index=8, number=8, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='trueGenotype', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.trueGenotype', index=9, number=9, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='trueFrom', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.trueFrom', index=10, number=11, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='genomicSequenceContext', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.genomicSequenceContext', index=11, number=15, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='calledCountIndices', full_name='org.campagnelab.dl.varanalysis.protobuf.BaseInformation.calledCountIndices', index=12, number=16, type=13, cpp_type=3, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=178, serialized_end=548, ) _SAMPLEINFO = _descriptor.Descriptor( name='SampleInfo', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='counts', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo.counts', index=0, number=1, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='isTumor', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo.isTumor', index=1, number=2, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='formattedCounts', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo.formattedCounts', index=2, number=3, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='isVariant', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo.isVariant', index=3, number=4, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='trueGenotype', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo.trueGenotype', index=4, number=5, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='prePostProcessingGenotype', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo.prePostProcessingGenotype', index=5, number=100, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='calledCountIndices', full_name='org.campagnelab.dl.varanalysis.protobuf.SampleInfo.calledCountIndices', index=6, number=9, type=13, cpp_type=3, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=551, serialized_end=777, ) _COUNTINFO = _descriptor.Descriptor( name='CountInfo', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='matchesReference', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.matchesReference', index=0, number=1, type=8, cpp_type=7, label=2, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='fromSequence', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.fromSequence', index=1, number=2, type=9, cpp_type=9, label=2, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='toSequence', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.toSequence', index=2, number=3, type=9, cpp_type=9, label=2, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='genotypeCountForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.genotypeCountForwardStrand', index=3, number=4, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='genotypeCountReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.genotypeCountReverseStrand', index=4, number=5, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='isIndel', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.isIndel', index=5, number=15, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='qualityScoresForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.qualityScoresForwardStrand', index=6, number=16, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='qualityScoresReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.qualityScoresReverseStrand', index=7, number=17, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='readIndicesForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readIndicesForwardStrand', index=8, number=18, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='readIndicesReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readIndicesReverseStrand', index=9, number=19, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='readMappingQualityForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readMappingQualityForwardStrand', index=10, number=21, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='readMappingQualityReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.readMappingQualityReverseStrand', index=11, number=22, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='numVariationsInReads', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.numVariationsInReads', index=12, number=23, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='insertSizes', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.insertSizes', index=13, number=24, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='targetAlignedLengths', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.targetAlignedLengths', index=14, number=25, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='queryAlignedLengths', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.queryAlignedLengths', index=15, number=26, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='queryPositions', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.queryPositions', index=16, number=30, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='pairFlags', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.pairFlags', index=17, number=27, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='distancesToReadVariationsForwardStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distancesToReadVariationsForwardStrand', index=18, number=28, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='distancesToReadVariationsReverseStrand', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distancesToReadVariationsReverseStrand', index=19, number=29, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='distanceToStartOfRead', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distanceToStartOfRead', index=20, number=31, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='distanceToEndOfRead', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.distanceToEndOfRead', index=21, number=32, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='isCalled', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.isCalled', index=22, number=20, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='gobyGenotypeIndex', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.gobyGenotypeIndex', index=23, number=40, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='offset', full_name='org.campagnelab.dl.varanalysis.protobuf.CountInfo.offset', index=24, number=101, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=780, serialized_end=2532, ) _NUMBERWITHFREQUENCY = _descriptor.Descriptor( name='NumberWithFrequency', full_name='org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='number', full_name='org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency.number', index=0, number=1, type=5, cpp_type=1, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='frequency', full_name='org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency.frequency', index=1, number=2, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=2534, serialized_end=2590, ) _SOMATICOUTPUT = _descriptor.Descriptor( name='SomaticOutput', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='isSomatic', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.isSomatic', index=0, number=200, type=8, cpp_type=7, label=2, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='reference_index', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.reference_index', index=1, number=1, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='reference_id', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.reference_id', index=2, number=10, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='position', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.position', index=3, number=2, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='mutatedBase', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.mutatedBase', index=4, number=4, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='indexOfMutatedBase', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.indexOfMutatedBase', index=5, number=7, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='frequencyOfMutation', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.frequencyOfMutation', index=6, number=6, type=2, cpp_type=6, label=1, has_default_value=False, default_value=float(0), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='referenceBase', full_name='org.campagnelab.dl.varanalysis.protobuf.SomaticOutput.referenceBase', index=7, number=5, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=2593, serialized_end=2794, ) _BASEINFORMATIONCOLLECTION.fields_by_name['records'].message_type = _BASEINFORMATION _BASEINFORMATION.fields_by_name['samples'].message_type = _SAMPLEINFO _SAMPLEINFO.fields_by_name['counts'].message_type = _COUNTINFO _COUNTINFO.fields_by_name['qualityScoresForwardStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['qualityScoresReverseStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['readIndicesForwardStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['readIndicesReverseStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['readMappingQualityForwardStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['readMappingQualityReverseStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['numVariationsInReads'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['insertSizes'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['targetAlignedLengths'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['queryAlignedLengths'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['queryPositions'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['pairFlags'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['distancesToReadVariationsForwardStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['distancesToReadVariationsReverseStrand'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['distanceToStartOfRead'].message_type = _NUMBERWITHFREQUENCY _COUNTINFO.fields_by_name['distanceToEndOfRead'].message_type = _NUMBERWITHFREQUENCY DESCRIPTOR.message_types_by_name['BaseInformationCollection'] = _BASEINFORMATIONCOLLECTION DESCRIPTOR.message_types_by_name['BaseInformation'] = _BASEINFORMATION DESCRIPTOR.message_types_by_name['SampleInfo'] = _SAMPLEINFO DESCRIPTOR.message_types_by_name['CountInfo'] = _COUNTINFO DESCRIPTOR.message_types_by_name['NumberWithFrequency'] = _NUMBERWITHFREQUENCY DESCRIPTOR.message_types_by_name['SomaticOutput'] = _SOMATICOUTPUT _sym_db.RegisterFileDescriptor(DESCRIPTOR) BaseInformationCollection = _reflection.GeneratedProtocolMessageType('BaseInformationCollection', (_message.Message,), dict( DESCRIPTOR = _BASEINFORMATIONCOLLECTION, __module__ = 'BaseInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.BaseInformationCollection) )) _sym_db.RegisterMessage(BaseInformationCollection) BaseInformation = _reflection.GeneratedProtocolMessageType('BaseInformation', (_message.Message,), dict( DESCRIPTOR = _BASEINFORMATION, __module__ = 'BaseInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.BaseInformation) )) _sym_db.RegisterMessage(BaseInformation) SampleInfo = _reflection.GeneratedProtocolMessageType('SampleInfo', (_message.Message,), dict( DESCRIPTOR = _SAMPLEINFO, __module__ = 'BaseInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.SampleInfo) )) _sym_db.RegisterMessage(SampleInfo) CountInfo = _reflection.GeneratedProtocolMessageType('CountInfo', (_message.Message,), dict( DESCRIPTOR = _COUNTINFO, __module__ = 'BaseInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.CountInfo) )) _sym_db.RegisterMessage(CountInfo) NumberWithFrequency = _reflection.GeneratedProtocolMessageType('NumberWithFrequency', (_message.Message,), dict( DESCRIPTOR = _NUMBERWITHFREQUENCY, __module__ = 'BaseInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.NumberWithFrequency) )) _sym_db.RegisterMessage(NumberWithFrequency) SomaticOutput = _reflection.GeneratedProtocolMessageType('SomaticOutput', (_message.Message,), dict( DESCRIPTOR = _SOMATICOUTPUT, __module__ = 'BaseInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.SomaticOutput) )) _sym_db.RegisterMessage(SomaticOutput) DESCRIPTOR.has_options = True DESCRIPTOR._options = _descriptor._ParseOptions(descriptor_pb2.FileOptions(), _b('\n\'org.campagnelab.dl.varanalysis.protobufH\001')) # @@protoc_insertion_point(module_scope)