# Generated by the protocol buffer compiler. DO NOT EDIT! # source: Reads.proto import sys _b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1')) from google.protobuf import descriptor as _descriptor from google.protobuf import message as _message from google.protobuf import reflection as _reflection from google.protobuf import symbol_database as _symbol_database from google.protobuf import descriptor_pb2 # @@protoc_insertion_point(imports) _sym_db = _symbol_database.Default() DESCRIPTOR = _descriptor.FileDescriptor( name='Reads.proto', package='goby', syntax='proto2', serialized_pb=_b('\n\x0bReads.proto\x12\x04goby\"0\n\x0eReadCollection\x12\x1e\n\x05reads\x18\x01 \x03(\x0b\x32\x0f.goby.ReadEntry\"\xad\x02\n\tReadEntry\x12\x12\n\nread_index\x18\x01 \x02(\r\x12\x15\n\rbarcode_index\x18\n \x01(\r\x12\x17\n\x0fread_identifier\x18\x17 \x01(\t\x12\x13\n\x0b\x64\x65scription\x18\x16 \x01(\t\x12\x13\n\x0bread_length\x18\x02 \x02(\r\x12\x10\n\x08sequence\x18\x03 \x01(\x0c\x12\x15\n\rsequence_pair\x18\x05 \x01(\x0c\x12\x18\n\x10read_length_pair\x18\x06 \x01(\r\x12\x16\n\x0equality_scores\x18\x04 \x01(\x0c\x12\x1b\n\x13quality_scores_pair\x18\x07 \x01(\x0c\x12\x17\n\x0f\x63ompressed_data\x18\x08 \x01(\x0c\x12!\n\tmeta_data\x18\x19 \x03(\x0b\x32\x0e.goby.MetaData\"&\n\x08MetaData\x12\x0b\n\x03key\x18\x01 \x02(\t\x12\r\n\x05value\x18\x02 \x02(\tB\x1e\n\x1aorg.campagnelab.goby.readsH\x01') ) _READCOLLECTION = _descriptor.Descriptor( name='ReadCollection', full_name='goby.ReadCollection', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='reads', full_name='goby.ReadCollection.reads', index=0, number=1, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=21, serialized_end=69, ) _READENTRY = _descriptor.Descriptor( name='ReadEntry', full_name='goby.ReadEntry', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='read_index', full_name='goby.ReadEntry.read_index', index=0, number=1, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='barcode_index', full_name='goby.ReadEntry.barcode_index', index=1, number=10, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='read_identifier', full_name='goby.ReadEntry.read_identifier', index=2, number=23, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='description', full_name='goby.ReadEntry.description', index=3, number=22, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='read_length', full_name='goby.ReadEntry.read_length', index=4, number=2, type=13, cpp_type=3, label=2, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='sequence', full_name='goby.ReadEntry.sequence', index=5, number=3, type=12, cpp_type=9, label=1, has_default_value=False, default_value=_b(""), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='sequence_pair', full_name='goby.ReadEntry.sequence_pair', index=6, number=5, type=12, cpp_type=9, label=1, has_default_value=False, default_value=_b(""), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='read_length_pair', full_name='goby.ReadEntry.read_length_pair', index=7, number=6, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='quality_scores', full_name='goby.ReadEntry.quality_scores', index=8, number=4, type=12, cpp_type=9, label=1, has_default_value=False, default_value=_b(""), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='quality_scores_pair', full_name='goby.ReadEntry.quality_scores_pair', index=9, number=7, type=12, cpp_type=9, label=1, has_default_value=False, default_value=_b(""), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='compressed_data', full_name='goby.ReadEntry.compressed_data', index=10, number=8, type=12, cpp_type=9, label=1, has_default_value=False, default_value=_b(""), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='meta_data', full_name='goby.ReadEntry.meta_data', index=11, number=25, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=72, serialized_end=373, ) _METADATA = _descriptor.Descriptor( name='MetaData', full_name='goby.MetaData', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='key', full_name='goby.MetaData.key', index=0, number=1, type=9, cpp_type=9, label=2, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='value', full_name='goby.MetaData.value', index=1, number=2, type=9, cpp_type=9, label=2, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=375, serialized_end=413, ) _READCOLLECTION.fields_by_name['reads'].message_type = _READENTRY _READENTRY.fields_by_name['meta_data'].message_type = _METADATA DESCRIPTOR.message_types_by_name['ReadCollection'] = _READCOLLECTION DESCRIPTOR.message_types_by_name['ReadEntry'] = _READENTRY DESCRIPTOR.message_types_by_name['MetaData'] = _METADATA _sym_db.RegisterFileDescriptor(DESCRIPTOR) ReadCollection = _reflection.GeneratedProtocolMessageType('ReadCollection', (_message.Message,), dict( DESCRIPTOR = _READCOLLECTION, __module__ = 'Reads_pb2' # @@protoc_insertion_point(class_scope:goby.ReadCollection) )) _sym_db.RegisterMessage(ReadCollection) ReadEntry = _reflection.GeneratedProtocolMessageType('ReadEntry', (_message.Message,), dict( DESCRIPTOR = _READENTRY, __module__ = 'Reads_pb2' # @@protoc_insertion_point(class_scope:goby.ReadEntry) )) _sym_db.RegisterMessage(ReadEntry) MetaData = _reflection.GeneratedProtocolMessageType('MetaData', (_message.Message,), dict( DESCRIPTOR = _METADATA, __module__ = 'Reads_pb2' # @@protoc_insertion_point(class_scope:goby.MetaData) )) _sym_db.RegisterMessage(MetaData) DESCRIPTOR.has_options = True DESCRIPTOR._options = _descriptor._ParseOptions(descriptor_pb2.FileOptions(), _b('\n\032org.campagnelab.goby.readsH\001')) # @@protoc_insertion_point(module_scope)