# Generated by the protocol buffer compiler. DO NOT EDIT! # source: SegmentInformationRecords.proto import sys _b=sys.version_info[0]<3 and (lambda x:x) or (lambda x:x.encode('latin1')) from google.protobuf import descriptor as _descriptor from google.protobuf import message as _message from google.protobuf import reflection as _reflection from google.protobuf import symbol_database as _symbol_database from google.protobuf import descriptor_pb2 # @@protoc_insertion_point(imports) _sym_db = _symbol_database.Default() DESCRIPTOR = _descriptor.FileDescriptor( name='SegmentInformationRecords.proto', package='org.campagnelab.dl.varanalysis.protobuf', syntax='proto2', serialized_pb=_b('\n\x1fSegmentInformationRecords.proto\x12\'org.campagnelab.dl.varanalysis.protobuf\"l\n\x1cSegmentInformationCollection\x12L\n\x07records\x18\x01 \x03(\x0b\x32;.org.campagnelab.dl.varanalysis.protobuf.SegmentInformation\"\x8b\x02\n\x12SegmentInformation\x12R\n\x0estart_position\x18\x01 \x01(\x0b\x32:.org.campagnelab.dl.varanalysis.protobuf.ReferencePosition\x12P\n\x0c\x65nd_position\x18\x02 \x01(\x0b\x32:.org.campagnelab.dl.varanalysis.protobuf.ReferencePosition\x12\x0e\n\x06length\x18\x05 \x01(\r\x12?\n\x06sample\x18\x04 \x03(\x0b\x32/.org.campagnelab.dl.varanalysis.protobuf.Sample\"E\n\x06Sample\x12;\n\x04\x62\x61se\x18\x01 \x03(\x0b\x32-.org.campagnelab.dl.varanalysis.protobuf.Base\"\x85\x02\n\x04\x42\x61se\x12\x10\n\x08\x66\x65\x61tures\x18\x01 \x03(\x02\x12\x0e\n\x06labels\x18\x02 \x03(\x02\x12\r\n\x05\x63olor\x18\x06 \x03(\r\x12\x11\n\ttrueLabel\x18\x03 \x03(\t\x12!\n\x19prePostProcessingGenotype\x18\n \x01(\t\x12\x0e\n\x06offset\x18\x0b \x01(\r\x12\x19\n\x11hasCandidateIndel\x18\x04 \x01(\x08\x12\x14\n\x0chasTrueIndel\x18\x05 \x01(\x08\x12\x11\n\tisVariant\x18\x07 \x01(\x08\x12\x17\n\x0freferenceAllele\x18\x08 \x01(\t\x12\x17\n\x0f\x66ormattedCounts\x18\t \x01(\t\x12\x10\n\x08location\x18\x0c \x01(\r\"T\n\x11ReferencePosition\x12\x17\n\x0freference_index\x18\x02 \x01(\r\x12\x14\n\x0creference_id\x18\x03 \x01(\t\x12\x10\n\x08location\x18\x01 \x01(\rB+\n\'org.campagnelab.dl.varanalysis.protobufH\x01') ) _SEGMENTINFORMATIONCOLLECTION = _descriptor.Descriptor( name='SegmentInformationCollection', full_name='org.campagnelab.dl.varanalysis.protobuf.SegmentInformationCollection', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='records', full_name='org.campagnelab.dl.varanalysis.protobuf.SegmentInformationCollection.records', index=0, number=1, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=76, serialized_end=184, ) _SEGMENTINFORMATION = _descriptor.Descriptor( name='SegmentInformation', full_name='org.campagnelab.dl.varanalysis.protobuf.SegmentInformation', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='start_position', full_name='org.campagnelab.dl.varanalysis.protobuf.SegmentInformation.start_position', index=0, number=1, type=11, cpp_type=10, label=1, has_default_value=False, default_value=None, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='end_position', full_name='org.campagnelab.dl.varanalysis.protobuf.SegmentInformation.end_position', index=1, number=2, type=11, cpp_type=10, label=1, has_default_value=False, default_value=None, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='length', full_name='org.campagnelab.dl.varanalysis.protobuf.SegmentInformation.length', index=2, number=5, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='sample', full_name='org.campagnelab.dl.varanalysis.protobuf.SegmentInformation.sample', index=3, number=4, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=187, serialized_end=454, ) _SAMPLE = _descriptor.Descriptor( name='Sample', full_name='org.campagnelab.dl.varanalysis.protobuf.Sample', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='base', full_name='org.campagnelab.dl.varanalysis.protobuf.Sample.base', index=0, number=1, type=11, cpp_type=10, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=456, serialized_end=525, ) _BASE = _descriptor.Descriptor( name='Base', full_name='org.campagnelab.dl.varanalysis.protobuf.Base', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='features', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.features', index=0, number=1, type=2, cpp_type=6, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='labels', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.labels', index=1, number=2, type=2, cpp_type=6, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='color', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.color', index=2, number=6, type=13, cpp_type=3, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='trueLabel', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.trueLabel', index=3, number=3, type=9, cpp_type=9, label=3, has_default_value=False, default_value=[], message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='prePostProcessingGenotype', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.prePostProcessingGenotype', index=4, number=10, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='offset', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.offset', index=5, number=11, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='hasCandidateIndel', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.hasCandidateIndel', index=6, number=4, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='hasTrueIndel', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.hasTrueIndel', index=7, number=5, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='isVariant', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.isVariant', index=8, number=7, type=8, cpp_type=7, label=1, has_default_value=False, default_value=False, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='referenceAllele', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.referenceAllele', index=9, number=8, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='formattedCounts', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.formattedCounts', index=10, number=9, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='location', full_name='org.campagnelab.dl.varanalysis.protobuf.Base.location', index=11, number=12, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=528, serialized_end=789, ) _REFERENCEPOSITION = _descriptor.Descriptor( name='ReferencePosition', full_name='org.campagnelab.dl.varanalysis.protobuf.ReferencePosition', filename=None, file=DESCRIPTOR, containing_type=None, fields=[ _descriptor.FieldDescriptor( name='reference_index', full_name='org.campagnelab.dl.varanalysis.protobuf.ReferencePosition.reference_index', index=0, number=2, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='reference_id', full_name='org.campagnelab.dl.varanalysis.protobuf.ReferencePosition.reference_id', index=1, number=3, type=9, cpp_type=9, label=1, has_default_value=False, default_value=_b("").decode('utf-8'), message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), _descriptor.FieldDescriptor( name='location', full_name='org.campagnelab.dl.varanalysis.protobuf.ReferencePosition.location', index=2, number=1, type=13, cpp_type=3, label=1, has_default_value=False, default_value=0, message_type=None, enum_type=None, containing_type=None, is_extension=False, extension_scope=None, options=None), ], extensions=[ ], nested_types=[], enum_types=[ ], options=None, is_extendable=False, syntax='proto2', extension_ranges=[], oneofs=[ ], serialized_start=791, serialized_end=875, ) _SEGMENTINFORMATIONCOLLECTION.fields_by_name['records'].message_type = _SEGMENTINFORMATION _SEGMENTINFORMATION.fields_by_name['start_position'].message_type = _REFERENCEPOSITION _SEGMENTINFORMATION.fields_by_name['end_position'].message_type = _REFERENCEPOSITION _SEGMENTINFORMATION.fields_by_name['sample'].message_type = _SAMPLE _SAMPLE.fields_by_name['base'].message_type = _BASE DESCRIPTOR.message_types_by_name['SegmentInformationCollection'] = _SEGMENTINFORMATIONCOLLECTION DESCRIPTOR.message_types_by_name['SegmentInformation'] = _SEGMENTINFORMATION DESCRIPTOR.message_types_by_name['Sample'] = _SAMPLE DESCRIPTOR.message_types_by_name['Base'] = _BASE DESCRIPTOR.message_types_by_name['ReferencePosition'] = _REFERENCEPOSITION _sym_db.RegisterFileDescriptor(DESCRIPTOR) SegmentInformationCollection = _reflection.GeneratedProtocolMessageType('SegmentInformationCollection', (_message.Message,), dict( DESCRIPTOR = _SEGMENTINFORMATIONCOLLECTION, __module__ = 'SegmentInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.SegmentInformationCollection) )) _sym_db.RegisterMessage(SegmentInformationCollection) SegmentInformation = _reflection.GeneratedProtocolMessageType('SegmentInformation', (_message.Message,), dict( DESCRIPTOR = _SEGMENTINFORMATION, __module__ = 'SegmentInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.SegmentInformation) )) _sym_db.RegisterMessage(SegmentInformation) Sample = _reflection.GeneratedProtocolMessageType('Sample', (_message.Message,), dict( DESCRIPTOR = _SAMPLE, __module__ = 'SegmentInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.Sample) )) _sym_db.RegisterMessage(Sample) Base = _reflection.GeneratedProtocolMessageType('Base', (_message.Message,), dict( DESCRIPTOR = _BASE, __module__ = 'SegmentInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.Base) )) _sym_db.RegisterMessage(Base) ReferencePosition = _reflection.GeneratedProtocolMessageType('ReferencePosition', (_message.Message,), dict( DESCRIPTOR = _REFERENCEPOSITION, __module__ = 'SegmentInformationRecords_pb2' # @@protoc_insertion_point(class_scope:org.campagnelab.dl.varanalysis.protobuf.ReferencePosition) )) _sym_db.RegisterMessage(ReferencePosition) DESCRIPTOR.has_options = True DESCRIPTOR._options = _descriptor._ParseOptions(descriptor_pb2.FileOptions(), _b('\n\'org.campagnelab.dl.varanalysis.protobufH\001')) # @@protoc_insertion_point(module_scope)