Index of /data/main/libm/libmems/1.6.0+4725-13/libMems

• Parent Directory
• AbstractGappedAlignment.h
• AbstractMatch.h
• Aligner.cpp
• Aligner.h
• Backbone.cpp
• Backbone.h
• ClustalInterface.cpp
• ClustalInterface.h
• CompactGappedAlignment.h
• DNAFileSML.cpp
• DNAFileSML.h
• DNAMemorySML.cpp
• DNAMemorySML.h
• DenseAbstractMatch.h
• DistanceMatrix.h
• FileSML.cpp
• FileSML.h
• Files.h
• GappedAligner.h
• GappedAlignment.cpp
• GappedAlignment.h
• GreedyBreakpointElimination.cpp
• GreedyBreakpointElimination.h
• HomologyHMM/
• HybridAbstractMatch.h
• Interval.cpp
• Interval.h
• IntervalList.cpp
• IntervalList.h
• Islands.cpp
• Islands.h
• LCB.h
• Makefile.am
• MaskedMemHash.cpp
• MaskedMemHash.h
• Match.h
• MatchFinder.cpp
• MatchFinder.h
• MatchHashEntry.cpp
• MatchHashEntry.h
• MatchList.cpp
• MatchList.h
• MatchProjectionAdapter.h
• Matrix.h
• MemHash.cpp
• MemHash.h
• Memory.h
• MemorySML.cpp
• MemorySML.h
• MuscleInterface.cpp
• MuscleInterface.h
• NumericMatrix.h
• PairwiseMatchAdapter.h
• PairwiseMatchFinder.cpp
• PairwiseMatchFinder.h
• ParallelMemHash.cpp
• ParallelMemHash.h
• PhyloTree.cpp
• PhyloTree.h
• ProgressiveAligner.cpp
• ProgressiveAligner.h
• RepeatHash.cpp
• RepeatHash.h
• RepeatMatch.cpp
• RepeatMatch.h
• RepeatMatchList.cpp
• RepeatMatchList.h
• Scoring.h
• SeedMasks.h
• SeedOccurrenceList.h
• SlotAllocator.cpp
• SlotAllocator.h
• SortedMerList.cpp
• SortedMerList.h
• SparseAbstractMatch.h
• SubstitutionMatrix.h
• SuperInterval.cpp
• SuperInterval.h
• TreeUtilities.h
• UngappedLocalAlignment.h
• configuration.h
• dmSML/
• gnAlignedSequences.cpp
• gnAlignedSequences.h
• gnRAWSequence.h
• twister.c
• twister.h