#!/usr/bin/env python
##
## @file    convertLayout.py
## @author  Frank T. Bergmann
##
## <!--------------------------------------------------------------------------
## This sample program is distributed under a different license than the rest
## of libSBML.  This program uses the open-source MIT license, as follows:
##
## Copyright (c) 2013-2016 by the California Institute of Technology
## (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
## and the University of Heidelberg (Germany), with support from the National
## Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
##
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## the rights to use, copy, modify, merge, publish, distribute, sublicense,
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## IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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## of the European Bioinformatics Institute (EMBL-EBI), nor of the University
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## ------------------------------------------------------------------------ -->

from libsbml import *
doc  = readSBMLFromFile('D:/DropboxSBML/Dropbox/Bug1867-l3.xml')
layoutNsUri = "http://projects.eml.org/bcb/sbml/level2"
layoutNs = LayoutPkgNamespaces(2, 4)
renderNsUri = "http://projects.eml.org/bcb/sbml/render/level2"
renderNs = RenderPkgNamespaces(2, 4)

prop = ConversionProperties(SBMLNamespaces(2,4))
prop.addOption('strict', False)
prop.addOption('setLevelAndVersion', True)
prop.addOption('ignorePackages', True)
doc.convert(prop)


docPlugin = doc.getPlugin("layout")
if docPlugin != None:
	docPlugin.setElementNamespace(layoutNsUri)

doc.getSBMLNamespaces().removePackageNamespace(3, 1, "layout", 1);        
doc.getSBMLNamespaces().addPackageNamespace("layout", 1);        

rdocPlugin = doc.getPlugin("render");
if rdocPlugin!= None:
	rdocPlugin->setElementNamespace(renderNsUri);

doc.getSBMLNamespaces().removePackageNamespace(3, 1, "render", 1);        
doc.getSBMLNamespaces().addPackageNamespace("render", 1);        

print doc.toSBML()