#
# @file TestSyncAnnotation.py
# @brief tests for improved syncAnnotation functions
#
# @author Akiya Jouraku (Python conversion)
# @author Sarah Keating
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file located at
# src/sbml/test/TestSyncAnnotation.cpp
# using the conversion program dev/utilities/translateTests/translateTests.pl.
# Any changes made here will be lost the next time the file is regenerated.
#
# -----------------------------------------------------------------------------
# This file is part of libSBML. Please visit http://sbml.org for more
# information about SBML, and the latest version of libSBML.
#
# Copyright 2005-2010 California Institute of Technology.
# Copyright 2002-2005 California Institute of Technology and
# Japan Science and Technology Corporation.
#
# This library is free software; you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation. A copy of the license agreement is provided
# in the file named "LICENSE.txt" included with this software distribution
# and also available online as http://sbml.org/software/libsbml/license.html
# -----------------------------------------------------------------------------
import sys
import unittest
import libsbml
def wrapString(s):
return s
pass
class TestSyncAnnotation(unittest.TestCase):
global d
d = None
global m
m = None
def equals(self, *x):
if len(x) == 2:
return x[0] == x[1]
elif len(x) == 1:
return x[0] == self.OSS.str()
def setUp(self):
filename = "../../sbml/annotation/test/test-data/annotationL3_2.xml"
self.d = libsbml.readSBML(filename)
self.m = self.d.getModel()
pass
def tearDown(self):
self.d = None
pass
def test_SyncAnnotation_deleteCVTerms(self):
c = self.m.getCompartment(1)
xml = libsbml.RDFAnnotationParser.deleteRDFCVTermAnnotation(c.getAnnotation())
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,xml.toXMLString()) )
pass
def test_SyncAnnotation_deleteModelOnly(self):
c = self.m.getCompartment(1)
xml = libsbml.RDFAnnotationParser.deleteRDFHistoryAnnotation(c.getAnnotation())
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,xml.toXMLString()) )
pass
def test_SyncAnnotation_deleteModelOnly_1(self):
c = self.m.getCompartment(7)
xml = libsbml.RDFAnnotationParser.deleteRDFHistoryAnnotation(c.getAnnotation())
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,xml.toXMLString()) )
xml = libsbml.RDFAnnotationParser.deleteRDFHistoryAnnotation(None)
self.assert_( xml == None )
xml = libsbml.RDFAnnotationParser.deleteRDFHistoryAnnotation(libsbml.XMLNode.convertStringToXMLNode(""))
self.assert_( xml == None )
pass
def test_SyncAnnotation_modifyBoth_1(self):
c = self.m.getCompartment(0)
mh = self.m.getModelHistory().clone()
cv = self.m.getCVTerm(0).clone()
c.setModelHistory(mh)
c.addCVTerm(cv)
c.unsetCVTerms()
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
c.unsetModelHistory()
c.addCVTerm(cv)
expected1 = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected1,c.toSBML()) )
c.setModelHistory(mh)
c.unsetCVTerms()
c.addCVTerm(cv)
expected2 = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected2,c.toSBML()) )
pass
def test_SyncAnnotation_modifyBoth_2(self):
c = self.m.getCompartment(0)
mh = self.m.getModelHistory().clone()
cv = self.m.getCVTerm(0).clone()
c.setModelHistory(mh)
c.unsetModelHistory()
c.addCVTerm(cv)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_modifyBoth_3(self):
c = self.m.getCompartment(0)
mh = self.m.getModelHistory().clone()
cv = self.m.getCVTerm(0).clone()
c.setModelHistory(mh)
c.addCVTerm(cv)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_modifyBoth_4(self):
c = self.m.getCompartment(1)
mh = c.getModelHistory().clone()
cv = c.getCVTerm(0).clone()
c.unsetModelHistory()
c.unsetCVTerms()
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
c.setModelHistory(mh)
c.addCVTerm(cv)
c.unsetCVTerms()
expected1 = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected1,c.toSBML()) )
c.unsetModelHistory()
c.unsetCVTerms()
c.addCVTerm(cv)
expected2 = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected2,c.toSBML()) )
c.unsetModelHistory()
c.unsetCVTerms()
c.addCVTerm(cv)
c.setModelHistory(mh)
expected3 = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected3,c.toSBML()) )
pass
def test_SyncAnnotation_modifyCVTerms_1(self):
c = self.m.getCompartment(4)
cv = c.getCVTerm(0).clone()
c.unsetCVTerms()
c.addCVTerm(cv)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_modifyCVTerms_2(self):
self.m.unsetCVTerms()
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,self.m.getAnnotation().toXMLString()) )
pass
def test_SyncAnnotation_modifyCVTerms_3(self):
cv = self.m.getCVTerm(0).clone()
self.m.unsetCVTerms()
self.m.addCVTerm(cv)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,self.m.getAnnotation().toXMLString()) )
pass
def test_SyncAnnotation_modifyCVTerms_4(self):
cv = self.m.getCVTerm(0).clone()
c = self.m.getCompartment(0)
c.addCVTerm(cv)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_modifyCVTerms_5(self):
c = self.m.getCompartment(6)
cv = c.getCVTerm(0).clone()
c.unsetCVTerms()
c.addCVTerm(cv)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_modifyHistory_1(self):
c = self.m.getCompartment(3)
mh = c.getModelHistory().clone()
c.unsetModelHistory()
c.setModelHistory(mh)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_modifyHistory_2(self):
self.m.unsetModelHistory()
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,self.m.getAnnotation().toXMLString()) )
pass
def test_SyncAnnotation_modifyHistory_3(self):
mh = self.m.getModelHistory().clone()
self.m.unsetModelHistory()
self.m.setModelHistory(mh)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,self.m.getAnnotation().toXMLString()) )
pass
def test_SyncAnnotation_modifyHistory_4(self):
c = self.m.getCompartment(0)
mh = self.m.getModelHistory().clone()
c.setModelHistory(mh)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_modifyHistory_5(self):
c = self.m.getCompartment(5)
mh = c.getModelHistory().clone()
c.unsetModelHistory()
c.setModelHistory(mh)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_noChanges_1(self):
c = self.m.getCompartment(1)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_noChanges_2(self):
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,self.m.getAnnotation().toXMLString()) )
pass
def test_SyncAnnotation_stringChangesMetaid(self):
c = libsbml.Compartment(3,1)
c.setMetaId("_000005")
c.setId("A")
addedAnn = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
c.setAnnotation(addedAnn)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_stringChangesMetaid_1(self):
c = libsbml.Model(2, 3)
c.setMetaId("_000005")
c.setId("A")
addedAnn = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
c.setAnnotation(addedAnn)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_stringChangesMetaid_2(self):
c = libsbml.Compartment(2,3)
c.setMetaId("_000005")
c.setId("A")
addedAnn = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
c.setAnnotation(addedAnn)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_stringChangesMetaid_3(self):
c = libsbml.Model(3,1)
c.setMetaId("_000005")
c.setId("A")
addedAnn = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
c.setAnnotation(addedAnn)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11Z\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02Z\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def test_SyncAnnotation_stringHistoryWhenNotValid(self):
c = libsbml.Compartment(2,3)
c.setMetaId("_000003")
c.setId("A")
addedAnn = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
c.setAnnotation(addedAnn)
expected = wrapString("\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" Le Novere\n"
+
" Nicolas\n"
+
" \n"
+
" lenov@ebi.ac.uk\n"
+
" \n"
+
" EMBL-EBI\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
" 2005-02-02T14:56:11\n"
+
" \n"
+
" \n"
+
" 2006-05-30T10:46:02\n"
+
" \n"
+
" \n"
+
" \n"
+
" \n"
+
"")
self.assertEqual( True, self.equals(expected,c.toSBML()) )
pass
def suite():
suite = unittest.TestSuite()
suite.addTest(unittest.makeSuite(TestSyncAnnotation))
return suite
if __name__ == "__main__":
if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() :
sys.exit(0)
else:
sys.exit(1)