#
# @file TestRDFAnnotation2.py
# @brief fomula units data unit tests
#
# @author Akiya Jouraku (Python conversion)
# @author Ben Bornstein
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file located at
# src/annotation/test/TestRDFAnnotation2.cpp
# using the conversion program dev/utilities/translateTests/translateTests.pl.
# Any changes made here will be lost the next time the file is regenerated.
#
# -----------------------------------------------------------------------------
# This file is part of libSBML. Please visit http://sbml.org for more
# information about SBML, and the latest version of libSBML.
#
# Copyright 2005-2010 California Institute of Technology.
# Copyright 2002-2005 California Institute of Technology and
# Japan Science and Technology Corporation.
#
# This library is free software; you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation. A copy of the license agreement is provided
# in the file named "LICENSE.txt" included with this software distribution
# and also available online as http://sbml.org/software/libsbml/license.html
# -----------------------------------------------------------------------------
import sys
import unittest
import libsbml
def wrapString(s):
return s
pass
class TestRDFAnnotation2(unittest.TestCase):
global d2
d2 = None
global m2
m2 = None
def equals(self, *x):
if len(x) == 2:
return x[0] == x[1]
elif len(x) == 1:
return x[0] == self.OSS.str()
def setUp(self):
filename = "../../sbml/annotation/test/test-data/annotation2.xml"
self.d2 = libsbml.readSBML(filename)
self.m2 = self.d2.getModel()
pass
def tearDown(self):
self.d2 = None
pass
def test_RDFAnnotation2_getModelHistory(self):
history = self.m2.getModelHistory()
self.assertTrue( history != None )
mc = history.getCreator(0)
self.assertTrue(( "Hucka" == mc.getFamilyName() ))
self.assertTrue(( "Mike" == mc.getGivenName() ))
self.assertTrue(( "mhucka@caltech.edu" == mc.getEmail() ))
self.assertTrue(( "BNMC" == mc.getOrganisation() ))
mc1 = history.getCreator(1)
self.assertTrue(( "Keating" == mc1.getFamilyName() ))
self.assertTrue(( "Sarah" == mc1.getGivenName() ))
self.assertTrue(( "skeating@caltech.edu" == mc1.getEmail() ))
self.assertTrue(( "UH" == mc1.getOrganisation() ))
date = history.getCreatedDate()
self.assertTrue( date.getYear() == 2005 )
self.assertTrue( date.getMonth() == 2 )
self.assertTrue( date.getDay() == 2 )
self.assertTrue( date.getHour() == 14 )
self.assertTrue( date.getMinute() == 56 )
self.assertTrue( date.getSecond() == 11 )
self.assertTrue( date.getSignOffset() == 0 )
self.assertTrue( date.getHoursOffset() == 0 )
self.assertTrue( date.getMinutesOffset() == 0 )
self.assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() ))
date = history.getModifiedDate()
self.assertTrue( date.getYear() == 2006 )
self.assertTrue( date.getMonth() == 5 )
self.assertTrue( date.getDay() == 30 )
self.assertTrue( date.getHour() == 10 )
self.assertTrue( date.getMinute() == 46 )
self.assertTrue( date.getSecond() == 2 )
self.assertTrue( date.getSignOffset() == 0 )
self.assertTrue( date.getHoursOffset() == 0 )
self.assertTrue( date.getMinutesOffset() == 0 )
self.assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() ))
date = history.getModifiedDate(1)
self.assertTrue( date.getYear() == 2007 )
self.assertTrue( date.getMonth() == 1 )
self.assertTrue( date.getDay() == 16 )
self.assertTrue( date.getHour() == 15 )
self.assertTrue( date.getMinute() == 31 )
self.assertTrue( date.getSecond() == 52 )
self.assertTrue( date.getSignOffset() == 0 )
self.assertTrue( date.getHoursOffset() == 0 )
self.assertTrue( date.getMinutesOffset() == 0 )
self.assertTrue(( "2007-01-16T15:31:52Z" == date.getDateAsString() ))
pass
def test_RDFAnnotation2_modelWithHistoryAndCVTerms(self):
h = libsbml.ModelHistory()
c = libsbml.ModelCreator()
c.setFamilyName("Keating")
c.setGivenName("Sarah")
h.addCreator(c)
d = libsbml.Date(2008,11,17,18,37,0,0,0,0)
h.setCreatedDate(d)
h.setModifiedDate(d)
self.m2.unsetModelHistory()
self.m2.setModelHistory(h)
cv = libsbml.CVTerm()
cv.setQualifierType(libsbml.BIOLOGICAL_QUALIFIER)
cv.setBiologicalQualifierType(libsbml.BQB_IS_VERSION_OF)
cv.addResource("http://www.geneontology.org/#GO:0005892")
self.m2.addCVTerm(cv)
ann = libsbml.RDFAnnotationParser.parseModelHistory(self.m2)
expected = wrapString("\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" Keating\n" +
" Sarah\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" 2008-11-17T18:37:00Z\n" +
" \n" +
" \n" +
" 2008-11-17T18:37:00Z\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
"")
if (ann != None):
self.assertEqual( True, self.equals(expected,ann.toXMLString()) )
pass
pass
pass
def test_RDFAnnotation2_modelWithHistoryAndMultipleModifiedDates(self):
h = libsbml.ModelHistory()
c = libsbml.ModelCreator()
c.setFamilyName("Keating")
c.setGivenName("Sarah")
h.addCreator(c)
d = libsbml.Date(2005,2,2,14,56,11)
h.setCreatedDate(d)
h.addModifiedDate(d)
h.addModifiedDate(d)
self.m2.unsetModelHistory()
self.m2.setModelHistory(h)
ann = libsbml.RDFAnnotationParser.parseModelHistory(self.m2)
expected = wrapString("\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" Keating\n" +
" Sarah\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" \n" +
"")
self.assertEqual( True, self.equals(expected,ann.toXMLString()) )
pass
def test_RDFAnnotation2_modelWithHistoryWithCharacterReference(self):
h = libsbml.ModelHistory()
c = libsbml.ModelCreator()
c.setFamilyName("Dräger")
c.setGivenName("Andreas")
h.addCreator(c)
d = libsbml.Date(2005,2,2,14,56,11)
h.setCreatedDate(d)
h.addModifiedDate(d)
self.m2.unsetModelHistory()
self.m2.setModelHistory(h)
ann = libsbml.RDFAnnotationParser.parseModelHistory(self.m2)
expected = wrapString("\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" Dräger\n" +
" Andreas\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" \n" +
"")
self.assertEqual( True, self.equals(expected,ann.toXMLString()) )
pass
def suite():
suite = unittest.TestSuite()
suite.addTest(unittest.TestLoader.loadTestsFromTestCase(TestRDFAnnotation2))
return suite
if __name__ == "__main__":
if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() :
sys.exit(0)
else:
sys.exit(1)