# # @file TestRDFAnnotationC.py # @brief RDFAnnotation parser unit tests # # @author Akiya Jouraku (Python conversion) # @author Sarah Keating # # ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ====== # # DO NOT EDIT THIS FILE. # # This file was generated automatically by converting the file located at # src/annotation/test/TestRDFAnnotationC.c # using the conversion program dev/utilities/translateTests/translateTests.pl. # Any changes made here will be lost the next time the file is regenerated. # # ----------------------------------------------------------------------------- # This file is part of libSBML. Please visit http://sbml.org for more # information about SBML, and the latest version of libSBML. # # Copyright 2005-2010 California Institute of Technology. # Copyright 2002-2005 California Institute of Technology and # Japan Science and Technology Corporation. # # This library is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation. A copy of the license agreement is provided # in the file named "LICENSE.txt" included with this software distribution # and also available online as http://sbml.org/software/libsbml/license.html # ----------------------------------------------------------------------------- import sys import unittest import libsbml class TestRDFAnnotationC(unittest.TestCase): global d d = None global m m = None def setUp(self): filename = "../../sbml/annotation/test/test-data/annotation.xml" self.d = libsbml.readSBML(filename) self.m = self.d.getModel() pass def tearDown(self): _dummyList = [ self.d ]; _dummyList[:] = []; del _dummyList pass def test_RDFAnnotation_C_delete(self): obj = self.m.getCompartment(0) node = libsbml.RDFAnnotationParser.parseCVTerms(obj) n1 = libsbml.RDFAnnotationParser.deleteRDFAnnotation(node) self.assertTrue( n1.getNumChildren() == 0 ) self.assertTrue(( "annotation" == n1.getName() )) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_RDFAnnotation_C_getModelHistory(self): self.assertTrue( (self.m == None) == False ) history = self.m.getModelHistory() self.assertTrue( history != None ) mc = history.getCreator(0) self.assertTrue(( "Le Novere" == mc.getFamilyName() )) self.assertTrue(( "Nicolas" == mc.getGivenName() )) self.assertTrue(( "lenov@ebi.ac.uk" == mc.getEmail() )) self.assertTrue(( "EMBL-EBI" == mc.getOrganisation() )) date = history.getCreatedDate() self.assertTrue( date.getYear() == 2005 ) self.assertTrue( date.getMonth() == 2 ) self.assertTrue( date.getDay() == 2 ) self.assertTrue( date.getHour() == 14 ) self.assertTrue( date.getMinute() == 56 ) self.assertTrue( date.getSecond() == 11 ) self.assertTrue( date.getSignOffset() == 0 ) self.assertTrue( date.getHoursOffset() == 0 ) self.assertTrue( date.getMinutesOffset() == 0 ) self.assertTrue(( "2005-02-02T14:56:11Z" == date.getDateAsString() )) date = history.getModifiedDate() self.assertTrue( date.getYear() == 2006 ) self.assertTrue( date.getMonth() == 5 ) self.assertTrue( date.getDay() == 30 ) self.assertTrue( date.getHour() == 10 ) self.assertTrue( date.getMinute() == 46 ) self.assertTrue( date.getSecond() == 2 ) self.assertTrue( date.getSignOffset() == 0 ) self.assertTrue( date.getHoursOffset() == 0 ) self.assertTrue( date.getMinutesOffset() == 0 ) self.assertTrue(( "2006-05-30T10:46:02Z" == date.getDateAsString() )) pass def test_RDFAnnotation_C_parseCVTerms(self): obj = self.m.getCompartment(0) node = libsbml.RDFAnnotationParser.parseCVTerms(obj) self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) self.assertTrue(( "RDF" == rdf.getName() )) self.assertTrue(( "rdf" == rdf.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) self.assertTrue(( "Description" == desc.getName() )) self.assertTrue(( "rdf" == desc.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) self.assertTrue( desc.getNumChildren() == 1 ) is1 = desc.getChild(0) self.assertTrue(( "is" == is1.getName() )) self.assertTrue(( "bqbiol" == is1.getPrefix() )) self.assertTrue( is1.getNumChildren() == 1 ) Bag = is1.getChild(0) self.assertTrue(( "Bag" == Bag.getName() )) self.assertTrue(( "rdf" == Bag.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) self.assertTrue( Bag.getNumChildren() == 4 ) li = Bag.getChild(0) self.assertTrue(( "li" == li.getName() )) self.assertTrue(( "rdf" == li.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) self.assertTrue( li.getNumChildren() == 0 ) li1 = Bag.getChild(1) self.assertTrue(( "li" == li1.getName() )) self.assertTrue(( "rdf" == li1.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li1.getURI() )) self.assertTrue( li1.getNumChildren() == 0 ) li2 = Bag.getChild(2) self.assertTrue(( "li" == li2.getName() )) self.assertTrue(( "rdf" == li2.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li2.getURI() )) self.assertTrue( li2.getNumChildren() == 0 ) li3 = Bag.getChild(3) self.assertTrue(( "li" == li3.getName() )) self.assertTrue(( "rdf" == li3.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li3.getURI() )) self.assertTrue( li3.getNumChildren() == 0 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def test_RDFAnnotation_C_parseModelHistory(self): node = libsbml.RDFAnnotationParser.parseModelHistory(self.m) self.assertTrue( node.getNumChildren() == 1 ) rdf = node.getChild(0) self.assertTrue(( "RDF" == rdf.getName() )) self.assertTrue(( "rdf" == rdf.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == rdf.getURI() )) self.assertTrue( rdf.getNumChildren() == 1 ) desc = rdf.getChild(0) self.assertTrue(( "Description" == desc.getName() )) self.assertTrue(( "rdf" == desc.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == desc.getURI() )) self.assertTrue( desc.getNumChildren() == 3 ) creator = desc.getChild(0) self.assertTrue(( "creator" == creator.getName() )) self.assertTrue(( "dc" == creator.getPrefix() )) self.assertTrue( creator.getNumChildren() == 1 ) Bag = creator.getChild(0) self.assertTrue(( "Bag" == Bag.getName() )) self.assertTrue(( "rdf" == Bag.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == Bag.getURI() )) self.assertTrue( Bag.getNumChildren() == 1 ) li = Bag.getChild(0) self.assertTrue(( "li" == li.getName() )) self.assertTrue(( "rdf" == li.getPrefix() )) self.assertTrue(( "http://www.w3.org/1999/02/22-rdf-syntax-ns#" == li.getURI() )) self.assertTrue( li.getNumChildren() == 3 ) N = li.getChild(0) self.assertTrue(( "N" == N.getName() )) self.assertTrue(( "vCard" == N.getPrefix() )) self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == N.getURI() )) self.assertTrue( N.getNumChildren() == 2 ) Family = N.getChild(0) self.assertTrue(( "Family" == Family.getName() )) self.assertTrue(( "vCard" == Family.getPrefix() )) self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Family.getURI() )) self.assertTrue( Family.getNumChildren() == 1 ) Given = N.getChild(1) self.assertTrue(( "Given" == Given.getName() )) self.assertTrue(( "vCard" == Given.getPrefix() )) self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Given.getURI() )) self.assertTrue( Given.getNumChildren() == 1 ) EMAIL = li.getChild(1) self.assertTrue(( "EMAIL" == EMAIL.getName() )) self.assertTrue(( "vCard" == EMAIL.getPrefix() )) self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == EMAIL.getURI() )) self.assertTrue( EMAIL.getNumChildren() == 1 ) ORG = li.getChild(2) self.assertTrue(( "ORG" == ORG.getName() )) self.assertTrue(( "vCard" == ORG.getPrefix() )) self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == ORG.getURI() )) self.assertTrue( ORG.getNumChildren() == 1 ) Orgname = ORG.getChild(0) self.assertTrue(( "Orgname" == Orgname.getName() )) self.assertTrue(( "vCard" == Orgname.getPrefix() )) self.assertTrue(( "http://www.w3.org/2001/vcard-rdf/3.0#" == Orgname.getURI() )) self.assertTrue( Orgname.getNumChildren() == 1 ) created = desc.getChild(1) self.assertTrue(( "created" == created.getName() )) self.assertTrue(( "dcterms" == created.getPrefix() )) self.assertTrue(( "http://purl.org/dc/terms/" == created.getURI() )) self.assertTrue( created.getNumChildren() == 1 ) cr_date = created.getChild(0) self.assertTrue(( "W3CDTF" == cr_date.getName() )) self.assertTrue(( "dcterms" == cr_date.getPrefix() )) self.assertTrue(( "http://purl.org/dc/terms/" == cr_date.getURI() )) self.assertTrue( cr_date.getNumChildren() == 1 ) modified = desc.getChild(2) self.assertTrue(( "modified" == modified.getName() )) self.assertTrue(( "dcterms" == modified.getPrefix() )) self.assertTrue(( "http://purl.org/dc/terms/" == modified.getURI() )) self.assertTrue( modified.getNumChildren() == 1 ) mo_date = created.getChild(0) self.assertTrue(( "W3CDTF" == mo_date.getName() )) self.assertTrue(( "dcterms" == mo_date.getPrefix() )) self.assertTrue(( "http://purl.org/dc/terms/" == mo_date.getURI() )) self.assertTrue( mo_date.getNumChildren() == 1 ) _dummyList = [ node ]; _dummyList[:] = []; del _dummyList pass def suite(): suite = unittest.TestSuite() suite.addTest(unittest.TestLoader.loadTestsFromTestCase(TestRDFAnnotationC)) return suite if __name__ == "__main__": if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() : sys.exit(0) else: sys.exit(1)