# # @file TestGetMultipleObjects.py # @brief GetMultipleObjects unit tests # # @author Akiya Jouraku (Python conversion) # @author Sarah Keating # # ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ====== # # DO NOT EDIT THIS FILE. # # This file was generated automatically by converting the file located at # src/sbml/test/TestGetMultipleObjects.cpp # using the conversion program dev/utilities/translateTests/translateTests.pl. # Any changes made here will be lost the next time the file is regenerated. # # ----------------------------------------------------------------------------- # This file is part of libSBML. Please visit http://sbml.org for more # information about SBML, and the latest version of libSBML. # # Copyright 2005-2010 California Institute of Technology. # Copyright 2002-2005 California Institute of Technology and # Japan Science and Technology Corporation. # # This library is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation. A copy of the license agreement is provided # in the file named "LICENSE.txt" included with this software distribution # and also available online as http://sbml.org/software/libsbml/license.html # ----------------------------------------------------------------------------- import sys import unittest import libsbml class TestGetMultipleObjects(unittest.TestCase): def test_GetMultipleObjects_allElements(self): reader = libsbml.SBMLReader() filename = "../../sbml/test/test-data/" filename += "multiple-ids.xml" d = reader.readSBML(filename) if (d == None): pass list = d.getListOfAllElements() self.assertTrue( list.getSize() == 37 ) d = None pass def test_GetMultipleObjects_getId(self): reader = libsbml.SBMLReader() filename = "../../sbml/test/test-data/" filename += "multiple-ids.xml" d = reader.readSBML(filename) if (d == None): pass obj = d.getElementBySId("no_id") self.assertTrue( obj == None ) obj = d.getElementBySId("") self.assertTrue( obj == None ) obj = d.getElementBySId("find_id") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_MODEL ) obj = d.getElementBySId("func1") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) obj = d.getElementBySId("comp") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ) obj = d.getElementBySId("b") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES ) obj = d.getElementBySId("x") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_PARAMETER ) obj = d.getElementBySId("J0") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_REACTION ) obj = d.getElementBySId("E0") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT ) d = None pass def test_GetMultipleObjects_getMetaId(self): reader = libsbml.SBMLReader() filename = "../../sbml/test/test-data/" filename += "multiple-ids.xml" d = reader.readSBML(filename) if (d == None): pass obj = d.getElementByMetaId("no_id") self.assertTrue( obj == None ) obj = d.getElementByMetaId("") self.assertTrue( obj == None ) obj = d.getElementByMetaId("meta1") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_DOCUMENT ) obj = d.getElementByMetaId("meta2") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_MODEL ) obj = d.getElementByMetaId("meta3") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_COMPARTMENT ) obj = d.getElementByMetaId("meta4") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_COMPARTMENT ) obj = d.getElementByMetaId("meta5") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_SPECIES ) obj = d.getElementByMetaId("meta6") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES ) obj = d.getElementByMetaId("meta7") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_REACTION ) obj = d.getElementByMetaId("meta8") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_REACTION ) obj = d.getElementByMetaId("meta9") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) obj = d.getElementByMetaId("meta10") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_SPECIES_REFERENCE ) obj = d.getElementByMetaId("meta11") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_KINETIC_LAW ) obj = d.getElementByMetaId("meta12") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_EVENT ) obj = d.getElementByMetaId("meta13") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT ) obj = d.getElementByMetaId("meta14") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_TRIGGER ) obj = d.getElementByMetaId("meta15") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) obj = d.getElementByMetaId("meta16") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) obj = d.getElementByMetaId("meta17") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_DELAY ) obj = d.getElementByMetaId("meta18") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_PARAMETER ) obj = d.getElementByMetaId("meta19") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_PRIORITY ) obj = d.getElementByMetaId("meta20") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) obj = d.getElementByMetaId("meta21") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_FUNCTION_DEFINITION ) obj = d.getElementByMetaId("meta22") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) obj = d.getElementByMetaId("meta23") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) obj = d.getElementByMetaId("meta24") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_RULE ) obj = d.getElementByMetaId("meta25") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_RATE_RULE ) obj = d.getElementByMetaId("meta26") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) obj = d.getElementByMetaId("meta27") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) obj = d.getElementByMetaId("meta28") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) obj = d.getElementByMetaId("meta29") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_UNIT_DEFINITION ) obj = d.getElementByMetaId("meta30") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) obj = d.getElementByMetaId("meta31") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_UNIT ) obj = d.getElementByMetaId("meta32") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT ) obj = d.getElementByMetaId("meta33") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_PARAMETER ) obj = d.getElementByMetaId("meta34") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LIST_OF ) self.assertTrue( obj.getItemTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) obj = d.getElementByMetaId("meta35") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_MODIFIER_SPECIES_REFERENCE ) d = None pass def test_GetMultipleObjects_noAssignments(self): reader = libsbml.SBMLReader() filename = "../../sbml/test/test-data/" filename += "assignments-invalid.xml" d = reader.readSBML(filename) if (d.getModel() == None): pass obj = d.getElementBySId("ia") self.assertTrue( obj == None ) obj = d.getElementByMetaId("ia_meta") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_INITIAL_ASSIGNMENT ) obj = d.getElementBySId("ar") self.assertTrue( obj == None ) obj = d.getElementByMetaId("ar_meta") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_ASSIGNMENT_RULE ) obj = d.getElementBySId("rr") self.assertTrue( obj == None ) obj = d.getElementByMetaId("rr_meta") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_RATE_RULE ) obj = d.getElementBySId("ea") self.assertTrue( obj == None ) obj = d.getElementByMetaId("ea_meta") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_EVENT_ASSIGNMENT ) d = None pass def test_GetMultipleObjects_noLocalParameters(self): reader = libsbml.SBMLReader() filename = "../../sbml/test/test-data/" filename += "multiple-ids.xml" d = reader.readSBML(filename) if (d == None): pass rxn = d.getElementBySId("J0") self.assertTrue( rxn != None ) obj = rxn.getElementBySId("x") self.assertTrue( obj == None ) obj = rxn.getElementByMetaId("meta28") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_LOCAL_PARAMETER ) d = None pass def test_GetMultipleObjects_noUnits(self): reader = libsbml.SBMLReader() filename = "../../sbml/test/test-data/" filename += "multiple-ids.xml" d = reader.readSBML(filename) if (d == None): pass obj = d.getElementBySId("volume") self.assertTrue( obj == None ) obj = d.getElementByMetaId("meta30") self.assertTrue( obj != None ) self.assertTrue( obj.getTypeCode() == libsbml.SBML_UNIT_DEFINITION ) d = None pass def suite(): suite = unittest.TestSuite() suite.addTest(unittest.TestLoader.loadTestsFromTestCase(TestGetMultipleObjects)) return suite if __name__ == "__main__": if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() : sys.exit(0) else: sys.exit(1)