# # @file TestKineticLaw.py # @brief SBML KineticLaw unit tests # # @author Akiya Jouraku (Python conversion) # @author Ben Bornstein # # ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ====== # # DO NOT EDIT THIS FILE. # # This file was generated automatically by converting the file located at # src/sbml/test/TestKineticLaw.c # using the conversion program dev/utilities/translateTests/translateTests.pl. # Any changes made here will be lost the next time the file is regenerated. # # ----------------------------------------------------------------------------- # This file is part of libSBML. Please visit http://sbml.org for more # information about SBML, and the latest version of libSBML. # # Copyright 2005-2010 California Institute of Technology. # Copyright 2002-2005 California Institute of Technology and # Japan Science and Technology Corporation. # # This library is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation. A copy of the license agreement is provided # in the file named "LICENSE.txt" included with this software distribution # and also available online as http://sbml.org/software/libsbml/license.html # ----------------------------------------------------------------------------- import sys import unittest import libsbml class TestKineticLaw(unittest.TestCase): global kl kl = None def setUp(self): self.kl = libsbml.KineticLaw(2,4) if (self.kl == None): pass pass def tearDown(self): _dummyList = [ self.kl ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_addParameter(self): p = libsbml.Parameter(2,4) p.setId( "p") self.kl.addParameter(p) self.assertTrue( self.kl.getNumParameters() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_create(self): self.assertTrue( self.kl.getTypeCode() == libsbml.SBML_KINETIC_LAW ) self.assertTrue( self.kl.getMetaId() == "" ) self.assertTrue( self.kl.getNotes() == None ) self.assertTrue( self.kl.getAnnotation() == None ) self.assertTrue( self.kl.getFormula() == "" ) self.assertTrue( self.kl.getMath() == None ) self.assertTrue( self.kl.getTimeUnits() == "" ) self.assertTrue( self.kl.getSubstanceUnits() == "" ) self.assertEqual( False, self.kl.isSetFormula() ) self.assertEqual( False, self.kl.isSetMath() ) self.assertEqual( False, self.kl.isSetTimeUnits() ) self.assertEqual( False, self.kl.isSetSubstanceUnits() ) self.assertTrue( self.kl.getNumParameters() == 0 ) pass def test_KineticLaw_createWithNS(self): xmlns = libsbml.XMLNamespaces() xmlns.add( "http://www.sbml.org", "testsbml") sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.KineticLaw(sbmlns) self.assertTrue( object.getTypeCode() == libsbml.SBML_KINETIC_LAW ) self.assertTrue( object.getMetaId() == "" ) self.assertTrue( object.getNotes() == None ) self.assertTrue( object.getAnnotation() == None ) self.assertTrue( object.getLevel() == 2 ) self.assertTrue( object.getVersion() == 1 ) self.assertTrue( object.getNamespaces() != None ) self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_free_NULL(self): _dummyList = [ None ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_getParameter(self): k1 = libsbml.Parameter(2,4) k2 = libsbml.Parameter(2,4) k1.setId( "k1") k2.setId( "k2") k1.setValue(3.14) k2.setValue(2.72) self.kl.addParameter(k1) self.kl.addParameter(k2) _dummyList = [ k1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ k2 ]; _dummyList[:] = []; del _dummyList self.assertTrue( self.kl.getNumParameters() == 2 ) k1 = self.kl.getParameter(0) k2 = self.kl.getParameter(1) self.assertTrue(( "k1" == k1.getId() )) self.assertTrue(( "k2" == k2.getId() )) self.assertTrue( k1.getValue() == 3.14 ) self.assertTrue( k2.getValue() == 2.72 ) pass def test_KineticLaw_getParameterById(self): k1 = libsbml.Parameter(2,4) k2 = libsbml.Parameter(2,4) k1.setId( "k1") k2.setId( "k2") k1.setValue(3.14) k2.setValue(2.72) self.kl.addParameter(k1) self.kl.addParameter(k2) _dummyList = [ k1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ k2 ]; _dummyList[:] = []; del _dummyList self.assertTrue( self.kl.getNumParameters() == 2 ) k1 = self.kl.getParameter( "k1") k2 = self.kl.getParameter( "k2") self.assertTrue(( "k1" == k1.getId() )) self.assertTrue(( "k2" == k2.getId() )) self.assertTrue( k1.getValue() == 3.14 ) self.assertTrue( k2.getValue() == 2.72 ) pass def test_KineticLaw_removeParameter(self): o1 = self.kl.createParameter() o2 = self.kl.createParameter() o3 = self.kl.createParameter() o3.setId("test") self.assertTrue( self.kl.removeParameter(0) == o1 ) self.assertTrue( self.kl.getNumParameters() == 2 ) self.assertTrue( self.kl.removeParameter(0) == o2 ) self.assertTrue( self.kl.getNumParameters() == 1 ) self.assertTrue( self.kl.removeParameter("test") == o3 ) self.assertTrue( self.kl.getNumParameters() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_setBadFormula(self): formula = "k1 X0"; self.kl.setFormula(formula) self.assertEqual( False, self.kl.isSetFormula() ) self.assertEqual( False, self.kl.isSetMath() ) pass def test_KineticLaw_setFormula(self): formula = "k1*X0"; self.kl.setFormula(formula) self.assertTrue(( formula == self.kl.getFormula() )) self.assertEqual( True, self.kl.isSetFormula() ) if (self.kl.getFormula() == formula): pass self.kl.setFormula(self.kl.getFormula()) self.assertTrue(( formula == self.kl.getFormula() )) self.kl.setFormula("") self.assertEqual( False, self.kl.isSetFormula() ) if (self.kl.getFormula() != None): pass pass def test_KineticLaw_setFormulaFromMath(self): math = libsbml.parseFormula("k1 * X0") self.assertEqual( False, self.kl.isSetMath() ) self.assertEqual( False, self.kl.isSetFormula() ) self.kl.setMath(math) self.assertEqual( True, self.kl.isSetMath() ) self.assertEqual( True, self.kl.isSetFormula() ) self.assertTrue(( "k1 * X0" == self.kl.getFormula() )) _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_setMath(self): math = libsbml.parseFormula("k3 / k2") self.kl.setMath(math) math1 = self.kl.getMath() self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) self.assertTrue( formula != None ) self.assertTrue(( "k3 / k2" == formula )) self.assertTrue( self.kl.getMath() != math ) self.assertEqual( True, self.kl.isSetMath() ) self.kl.setMath(self.kl.getMath()) math1 = self.kl.getMath() self.assertTrue( math1 != None ) formula = libsbml.formulaToString(math1) self.assertTrue( formula != None ) self.assertTrue(( "k3 / k2" == formula )) self.assertTrue( self.kl.getMath() != math ) self.kl.setMath(None) self.assertEqual( False, self.kl.isSetMath() ) if (self.kl.getMath() != None): pass _dummyList = [ math ]; _dummyList[:] = []; del _dummyList pass def test_KineticLaw_setMathFromFormula(self): formula = "k3 / k2"; self.assertEqual( False, self.kl.isSetMath() ) self.assertEqual( False, self.kl.isSetFormula() ) self.kl.setFormula(formula) self.assertEqual( True, self.kl.isSetMath() ) self.assertEqual( True, self.kl.isSetFormula() ) formula = libsbml.formulaToString(self.kl.getMath()) self.assertTrue(( "k3 / k2" == formula )) pass def suite(): suite = unittest.TestSuite() suite.addTest(unittest.TestLoader.loadTestsFromTestCase(TestKineticLaw)) return suite if __name__ == "__main__": if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() : sys.exit(0) else: sys.exit(1)