# # @file TestL3Species.py # @brief L3 Species unit tests # # @author Akiya Jouraku (Python conversion) # @author Sarah Keating # # ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ====== # # DO NOT EDIT THIS FILE. # # This file was generated automatically by converting the file located at # src/sbml/test/TestL3Species.c # using the conversion program dev/utilities/translateTests/translateTests.pl. # Any changes made here will be lost the next time the file is regenerated. # # ----------------------------------------------------------------------------- # This file is part of libSBML. Please visit http://sbml.org for more # information about SBML, and the latest version of libSBML. # # Copyright 2005-2010 California Institute of Technology. # Copyright 2002-2005 California Institute of Technology and # Japan Science and Technology Corporation. # # This library is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation. A copy of the license agreement is provided # in the file named "LICENSE.txt" included with this software distribution # and also available online as http://sbml.org/software/libsbml/license.html # ----------------------------------------------------------------------------- import sys import unittest import libsbml def isnan(x): return (x != x) pass class TestL3Species(unittest.TestCase): global S S = None def setUp(self): self.S = libsbml.Species(3,1) if (self.S == None): pass pass def tearDown(self): _dummyList = [ self.S ]; _dummyList[:] = []; del _dummyList pass def test_L3_Species_ModelHistory(self): (self.S).setMetaId("_3") history = libsbml.ModelHistory() i = (self.S).setModelHistory(history) self.assertTrue( i == libsbml.LIBSBML_INVALID_OBJECT ) self.assertEqual( False, (self.S).isSetModelHistory() ) mc = libsbml.ModelCreator() date = libsbml.Date(2005,12,30,12,15,45,1,2,0) mc.setFamilyName( "Keating") mc.setGivenName( "Sarah") mc.setEmail( "sbml-team@caltech.edu") mc.setOrganisation( "UH") history.addCreator(mc) history.setCreatedDate(date) history.setModifiedDate(date) i = (self.S).setModelHistory(history) self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( True, (self.S).isSetModelHistory() ) i = (self.S).unsetModelHistory() self.assertTrue( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assertEqual( False, (self.S).isSetModelHistory() ) self.assertTrue( (self.S).getModelHistory() == None ) _dummyList = [ history ]; _dummyList[:] = []; del _dummyList pass def test_L3_Species_NS(self): self.assertTrue( self.S.getNamespaces() != None ) self.assertTrue( self.S.getNamespaces().getLength() == 1 ) self.assertTrue(( "http://www.sbml.org/sbml/level3/version1/core" == self.S.getNamespaces().getURI(0) )) pass def test_L3_Species_boundaryCondition(self): self.assertTrue( self.S.isSetBoundaryCondition() == False ) self.S.setBoundaryCondition(True) self.assertTrue( self.S.getBoundaryCondition() == True ) self.assertTrue( self.S.isSetBoundaryCondition() == True ) self.S.setBoundaryCondition(False) self.assertTrue( self.S.getBoundaryCondition() == False ) self.assertTrue( self.S.isSetBoundaryCondition() == True ) pass def test_L3_Species_compartment(self): compartment = "cell"; self.assertEqual( False, self.S.isSetCompartment() ) self.S.setCompartment(compartment) self.assertTrue(( compartment == self.S.getCompartment() )) self.assertEqual( True, self.S.isSetCompartment() ) if (self.S.getCompartment() == compartment): pass pass def test_L3_Species_constant(self): self.assertTrue( self.S.isSetConstant() == False ) self.S.setConstant(True) self.assertTrue( self.S.getConstant() == True ) self.assertTrue( self.S.isSetConstant() == True ) self.S.setConstant(False) self.assertTrue( self.S.getConstant() == False ) self.assertTrue( self.S.isSetConstant() == True ) pass def test_L3_Species_conversionFactor(self): units = "volume"; self.assertEqual( False, self.S.isSetConversionFactor() ) self.S.setConversionFactor(units) self.assertTrue(( units == self.S.getConversionFactor() )) self.assertEqual( True, self.S.isSetConversionFactor() ) if (self.S.getConversionFactor() == units): pass self.S.unsetConversionFactor() self.assertEqual( False, self.S.isSetConversionFactor() ) if (self.S.getConversionFactor() != None): pass pass def test_L3_Species_create(self): self.assertTrue( self.S.getTypeCode() == libsbml.SBML_SPECIES ) self.assertTrue( self.S.getMetaId() == "" ) self.assertTrue( self.S.getNotes() == None ) self.assertTrue( self.S.getAnnotation() == None ) self.assertTrue( self.S.getId() == "" ) self.assertTrue( self.S.getName() == "" ) self.assertTrue( self.S.getCompartment() == "" ) self.assertEqual( True, isnan(self.S.getInitialAmount()) ) self.assertEqual( True, isnan(self.S.getInitialConcentration()) ) self.assertTrue( self.S.getSubstanceUnits() == "" ) self.assertTrue( self.S.getHasOnlySubstanceUnits() == False ) self.assertTrue( self.S.getBoundaryCondition() == False ) self.assertTrue( self.S.getConstant() == False ) self.assertTrue( self.S.getConversionFactor() == "" ) self.assertEqual( False, self.S.isSetId() ) self.assertEqual( False, self.S.isSetName() ) self.assertEqual( False, self.S.isSetCompartment() ) self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( False, self.S.isSetInitialConcentration() ) self.assertEqual( False, self.S.isSetSubstanceUnits() ) self.assertEqual( False, self.S.isSetHasOnlySubstanceUnits() ) self.assertEqual( False, self.S.isSetBoundaryCondition() ) self.assertEqual( False, self.S.isSetConstant() ) self.assertEqual( False, self.S.isSetConversionFactor() ) pass def test_L3_Species_createWithNS(self): xmlns = libsbml.XMLNamespaces() xmlns.add( "http://www.sbml.org", "testsbml") sbmlns = libsbml.SBMLNamespaces(3,1) sbmlns.addNamespaces(xmlns) s = libsbml.Species(sbmlns) self.assertTrue( s.getTypeCode() == libsbml.SBML_SPECIES ) self.assertTrue( s.getMetaId() == "" ) self.assertTrue( s.getNotes() == None ) self.assertTrue( s.getAnnotation() == None ) self.assertTrue( s.getLevel() == 3 ) self.assertTrue( s.getVersion() == 1 ) self.assertTrue( s.getNamespaces() != None ) self.assertTrue( s.getNamespaces().getLength() == 2 ) self.assertTrue( s.getId() == "" ) self.assertTrue( s.getName() == "" ) self.assertTrue( s.getCompartment() == "" ) self.assertEqual( True, isnan(s.getInitialAmount()) ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) self.assertTrue( s.getSubstanceUnits() == "" ) self.assertTrue( s.getHasOnlySubstanceUnits() == False ) self.assertTrue( s.getBoundaryCondition() == False ) self.assertTrue( s.getConstant() == False ) self.assertTrue( s.getConversionFactor() == "" ) self.assertEqual( False, s.isSetId() ) self.assertEqual( False, s.isSetName() ) self.assertEqual( False, s.isSetCompartment() ) self.assertEqual( False, s.isSetInitialAmount() ) self.assertEqual( False, s.isSetInitialConcentration() ) self.assertEqual( False, s.isSetSubstanceUnits() ) self.assertEqual( False, s.isSetHasOnlySubstanceUnits() ) self.assertEqual( False, s.isSetBoundaryCondition() ) self.assertEqual( False, s.isSetConstant() ) self.assertEqual( False, s.isSetConversionFactor() ) _dummyList = [ s ]; _dummyList[:] = []; del _dummyList pass def test_L3_Species_free_NULL(self): _dummyList = [ None ]; _dummyList[:] = []; del _dummyList pass def test_L3_Species_hasOnlySubstanceUnits(self): self.assertTrue( self.S.isSetHasOnlySubstanceUnits() == False ) self.S.setHasOnlySubstanceUnits(True) self.assertTrue( self.S.getHasOnlySubstanceUnits() == True ) self.assertTrue( self.S.isSetHasOnlySubstanceUnits() == True ) self.S.setHasOnlySubstanceUnits(False) self.assertTrue( self.S.getHasOnlySubstanceUnits() == False ) self.assertTrue( self.S.isSetHasOnlySubstanceUnits() == True ) pass def test_L3_Species_hasRequiredAttributes(self): s = libsbml.Species(3,1) self.assertEqual( False, s.hasRequiredAttributes() ) s.setId( "id") self.assertEqual( False, s.hasRequiredAttributes() ) s.setCompartment( "cell") self.assertEqual( False, s.hasRequiredAttributes() ) s.setHasOnlySubstanceUnits(False) self.assertEqual( False, s.hasRequiredAttributes() ) s.setBoundaryCondition(False) self.assertEqual( False, s.hasRequiredAttributes() ) s.setConstant(False) self.assertEqual( True, s.hasRequiredAttributes() ) _dummyList = [ s ]; _dummyList[:] = []; del _dummyList pass def test_L3_Species_id(self): id = "mitochondria"; self.assertEqual( False, self.S.isSetId() ) self.S.setId(id) self.assertTrue(( id == self.S.getId() )) self.assertEqual( True, self.S.isSetId() ) if (self.S.getId() == id): pass pass def test_L3_Species_initDefaults(self): s = libsbml.Species(3,1) self.assertTrue( s.getId() == "" ) self.assertTrue( s.getName() == "" ) self.assertTrue( s.getCompartment() == "" ) self.assertEqual( True, isnan(s.getInitialAmount()) ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) self.assertTrue( s.getSubstanceUnits() == "" ) self.assertTrue( s.getHasOnlySubstanceUnits() == False ) self.assertTrue( s.getBoundaryCondition() == False ) self.assertTrue( s.getConstant() == False ) self.assertTrue( s.getConversionFactor() == "" ) self.assertEqual( False, s.isSetId() ) self.assertEqual( False, s.isSetName() ) self.assertEqual( False, s.isSetCompartment() ) self.assertEqual( False, s.isSetInitialAmount() ) self.assertEqual( False, s.isSetInitialConcentration() ) self.assertEqual( False, s.isSetSubstanceUnits() ) self.assertEqual( False, s.isSetHasOnlySubstanceUnits() ) self.assertEqual( False, s.isSetBoundaryCondition() ) self.assertEqual( False, s.isSetConstant() ) self.assertEqual( False, s.isSetConversionFactor() ) s.initDefaults() self.assertTrue( s.getId() == "" ) self.assertTrue( s.getName() == "" ) self.assertTrue( s.getCompartment() == "" ) self.assertEqual( True, isnan(s.getInitialAmount()) ) self.assertEqual( True, isnan(s.getInitialConcentration()) ) self.assertTrue(( "mole" == s.getSubstanceUnits() )) self.assertTrue( s.getHasOnlySubstanceUnits() == False ) self.assertTrue( s.getBoundaryCondition() == False ) self.assertTrue( s.getConstant() == False ) self.assertTrue( s.getConversionFactor() == "" ) self.assertEqual( False, s.isSetId() ) self.assertEqual( False, s.isSetName() ) self.assertEqual( False, s.isSetCompartment() ) self.assertEqual( False, s.isSetInitialAmount() ) self.assertEqual( False, s.isSetInitialConcentration() ) self.assertEqual( True, s.isSetSubstanceUnits() ) self.assertEqual( True, s.isSetHasOnlySubstanceUnits() ) self.assertEqual( True, s.isSetBoundaryCondition() ) self.assertEqual( True, s.isSetConstant() ) self.assertEqual( False, s.isSetConversionFactor() ) _dummyList = [ s ]; _dummyList[:] = []; del _dummyList pass def test_L3_Species_initialAmount(self): initialAmount = 0.2 self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( True, isnan(self.S.getInitialAmount()) ) self.S.setInitialAmount(initialAmount) self.assertTrue( self.S.getInitialAmount() == initialAmount ) self.assertEqual( True, self.S.isSetInitialAmount() ) self.S.unsetInitialAmount() self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( True, isnan(self.S.getInitialAmount()) ) pass def test_L3_Species_initialConcentration(self): initialConcentration = 0.2 self.assertEqual( False, self.S.isSetInitialConcentration() ) self.assertEqual( True, isnan(self.S.getInitialConcentration()) ) self.S.setInitialConcentration(initialConcentration) self.assertTrue( self.S.getInitialConcentration() == initialConcentration ) self.assertEqual( True, self.S.isSetInitialConcentration() ) self.S.unsetInitialConcentration() self.assertEqual( False, self.S.isSetInitialConcentration() ) self.assertEqual( True, isnan(self.S.getInitialConcentration()) ) pass def test_L3_Species_name(self): name = "My_Favorite_Factory"; self.assertEqual( False, self.S.isSetName() ) self.S.setName(name) self.assertTrue(( name == self.S.getName() )) self.assertEqual( True, self.S.isSetName() ) if (self.S.getName() == name): pass self.S.unsetName() self.assertEqual( False, self.S.isSetName() ) if (self.S.getName() != None): pass pass def test_L3_Species_substanceUnits(self): units = "volume"; self.assertEqual( False, self.S.isSetSubstanceUnits() ) self.S.setSubstanceUnits(units) self.assertTrue(( units == self.S.getSubstanceUnits() )) self.assertEqual( True, self.S.isSetSubstanceUnits() ) if (self.S.getSubstanceUnits() == units): pass self.S.unsetSubstanceUnits() self.assertEqual( False, self.S.isSetSubstanceUnits() ) if (self.S.getSubstanceUnits() != None): pass pass def suite(): suite = unittest.TestSuite() suite.addTest(unittest.TestLoader.loadTestsFromTestCase(TestL3Species)) return suite if __name__ == "__main__": if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() : sys.exit(0) else: sys.exit(1)