# # @file TestReaction.py # @brief SBML Reaction unit tests # # @author Akiya Jouraku (Python conversion) # @author Ben Bornstein # # ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ====== # # DO NOT EDIT THIS FILE. # # This file was generated automatically by converting the file located at # src/sbml/test/TestReaction.c # using the conversion program dev/utilities/translateTests/translateTests.pl. # Any changes made here will be lost the next time the file is regenerated. # # ----------------------------------------------------------------------------- # This file is part of libSBML. Please visit http://sbml.org for more # information about SBML, and the latest version of libSBML. # # Copyright 2005-2010 California Institute of Technology. # Copyright 2002-2005 California Institute of Technology and # Japan Science and Technology Corporation. # # This library is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation. A copy of the license agreement is provided # in the file named "LICENSE.txt" included with this software distribution # and also available online as http://sbml.org/software/libsbml/license.html # ----------------------------------------------------------------------------- import sys import unittest import libsbml class TestReaction(unittest.TestCase): global R R = None def setUp(self): self.R = libsbml.Reaction(2,4) if (self.R == None): pass pass def tearDown(self): _dummyList = [ self.R ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_addProduct(self): sr = libsbml.SpeciesReference(2,4) sr.setSpecies( "s") self.R.addProduct(sr) self.assertTrue( self.R.getNumReactants() == 0 ) self.assertTrue( self.R.getNumProducts() == 1 ) self.assertTrue( self.R.getNumModifiers() == 0 ) _dummyList = [ sr ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_addReactant(self): sr = libsbml.SpeciesReference(2,4) sr.setSpecies( "s") self.R.addReactant(sr) self.assertTrue( self.R.getNumReactants() == 1 ) self.assertTrue( self.R.getNumProducts() == 0 ) self.assertTrue( self.R.getNumModifiers() == 0 ) _dummyList = [ sr ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_create(self): self.assertTrue( self.R.getTypeCode() == libsbml.SBML_REACTION ) self.assertTrue( self.R.getMetaId() == "" ) self.assertTrue( self.R.getNotes() == None ) self.assertTrue( self.R.getAnnotation() == None ) self.assertTrue( self.R.getId() == "" ) self.assertTrue( self.R.getName() == "" ) self.assertTrue( self.R.getKineticLaw() == None ) self.assertTrue( self.R.getReversible() != False ) self.assertTrue( self.R.getFast() == False ) self.assertEqual( False, self.R.isSetId() ) self.assertEqual( False, self.R.isSetName() ) self.assertEqual( False, self.R.isSetKineticLaw() ) self.assertEqual( False, self.R.isSetFast() ) self.assertEqual( True, self.R.isSetReversible() ) self.assertTrue( self.R.getNumReactants() == 0 ) self.assertTrue( self.R.getNumProducts() == 0 ) self.assertTrue( self.R.getNumModifiers() == 0 ) pass def test_Reaction_createWithNS(self): xmlns = libsbml.XMLNamespaces() xmlns.add( "http://www.sbml.org", "testsbml") sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Reaction(sbmlns) self.assertTrue( object.getTypeCode() == libsbml.SBML_REACTION ) self.assertTrue( object.getMetaId() == "" ) self.assertTrue( object.getNotes() == None ) self.assertTrue( object.getAnnotation() == None ) self.assertTrue( object.getLevel() == 2 ) self.assertTrue( object.getVersion() == 1 ) self.assertTrue( object.getNamespaces() != None ) self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_free_NULL(self): _dummyList = [ None ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_getProduct(self): sr1 = libsbml.SpeciesReference(2,4) sr2 = libsbml.SpeciesReference(2,4) sr1.setSpecies( "P1") sr2.setSpecies( "P2") self.R.addProduct(sr1) self.R.addProduct(sr2) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList self.assertTrue( self.R.getNumReactants() == 0 ) self.assertTrue( self.R.getNumProducts() == 2 ) self.assertTrue( self.R.getNumModifiers() == 0 ) sr1 = self.R.getProduct(0) sr2 = self.R.getProduct(1) self.assertTrue(( "P1" == sr1.getSpecies() )) self.assertTrue(( "P2" == sr2.getSpecies() )) pass def test_Reaction_getProductById(self): sr1 = libsbml.SpeciesReference(2,4) sr1.setSpecies( "P1") sr2 = libsbml.SpeciesReference(2,4) sr2.setSpecies( "P1") self.R.addProduct(sr1) self.R.addProduct(sr2) self.assertTrue( self.R.getNumReactants() == 0 ) self.assertTrue( self.R.getNumProducts() == 2 ) self.assertTrue( self.R.getNumModifiers() == 0 ) self.assertTrue( self.R.getProduct( "P1") != sr1 ) self.assertTrue( self.R.getProduct( "P2") != sr2 ) self.assertTrue( self.R.getProduct( "P3") == None ) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_getReactant(self): sr1 = libsbml.SpeciesReference(2,4) sr2 = libsbml.SpeciesReference(2,4) sr1.setSpecies( "R1") sr2.setSpecies( "R2") self.R.addReactant(sr1) self.R.addReactant(sr2) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList self.assertTrue( self.R.getNumReactants() == 2 ) self.assertTrue( self.R.getNumProducts() == 0 ) self.assertTrue( self.R.getNumModifiers() == 0 ) sr1 = self.R.getReactant(0) sr2 = self.R.getReactant(1) self.assertTrue(( "R1" == sr1.getSpecies() )) self.assertTrue(( "R2" == sr2.getSpecies() )) pass def test_Reaction_getReactantById(self): sr1 = libsbml.SpeciesReference(2,4) sr1.setSpecies( "R1") sr2 = libsbml.SpeciesReference(2,4) sr2.setSpecies( "R2") self.R.addReactant(sr1) self.R.addReactant(sr2) self.assertTrue( self.R.getNumReactants() == 2 ) self.assertTrue( self.R.getNumProducts() == 0 ) self.assertTrue( self.R.getNumModifiers() == 0 ) self.assertTrue( self.R.getReactant( "R1") != sr1 ) self.assertTrue( self.R.getReactant( "R2") != sr2 ) self.assertTrue( self.R.getReactant( "R3") == None ) _dummyList = [ sr1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ sr2 ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_removeProduct(self): o1 = self.R.createProduct() o2 = self.R.createProduct() o3 = self.R.createProduct() o3.setSpecies("test") self.assertTrue( self.R.removeProduct(0) == o1 ) self.assertTrue( self.R.getNumProducts() == 2 ) self.assertTrue( self.R.removeProduct(0) == o2 ) self.assertTrue( self.R.getNumProducts() == 1 ) self.assertTrue( self.R.removeProduct("test") == o3 ) self.assertTrue( self.R.getNumProducts() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_removeReactant(self): o1 = self.R.createReactant() o2 = self.R.createReactant() o3 = self.R.createReactant() o3.setSpecies("test") self.assertTrue( self.R.removeReactant(0) == o1 ) self.assertTrue( self.R.getNumReactants() == 2 ) self.assertTrue( self.R.removeReactant(0) == o2 ) self.assertTrue( self.R.getNumReactants() == 1 ) self.assertTrue( self.R.removeReactant("test") == o3 ) self.assertTrue( self.R.getNumReactants() == 0 ) _dummyList = [ o1 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o2 ]; _dummyList[:] = []; del _dummyList _dummyList = [ o3 ]; _dummyList[:] = []; del _dummyList pass def test_Reaction_setId(self): id = "J1"; self.R.setId(id) self.assertTrue(( id == self.R.getId() )) self.assertEqual( True, self.R.isSetId() ) if (self.R.getId() == id): pass self.R.setId(self.R.getId()) self.assertTrue(( id == self.R.getId() )) self.R.setId("") self.assertEqual( False, self.R.isSetId() ) if (self.R.getId() != None): pass pass def test_Reaction_setName(self): name = "MapK_Cascade"; self.R.setName(name) self.assertTrue(( name == self.R.getName() )) self.assertEqual( True, self.R.isSetName() ) if (self.R.getName() == name): pass self.R.setName(self.R.getName()) self.assertTrue(( name == self.R.getName() )) self.R.setName("") self.assertEqual( False, self.R.isSetName() ) if (self.R.getName() != None): pass pass def suite(): suite = unittest.TestSuite() suite.addTest(unittest.TestLoader.loadTestsFromTestCase(TestReaction)) return suite if __name__ == "__main__": if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() : sys.exit(0) else: sys.exit(1)