# # @file TestSpecies.py # @brief Species unit tests # # @author Akiya Jouraku (Python conversion) # @author Ben Bornstein # # ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ====== # # DO NOT EDIT THIS FILE. # # This file was generated automatically by converting the file located at # src/sbml/test/TestSpecies.c # using the conversion program dev/utilities/translateTests/translateTests.pl. # Any changes made here will be lost the next time the file is regenerated. # # ----------------------------------------------------------------------------- # This file is part of libSBML. Please visit http://sbml.org for more # information about SBML, and the latest version of libSBML. # # Copyright 2005-2010 California Institute of Technology. # Copyright 2002-2005 California Institute of Technology and # Japan Science and Technology Corporation. # # This library is free software; you can redistribute it and/or modify it # under the terms of the GNU Lesser General Public License as published by # the Free Software Foundation. A copy of the license agreement is provided # in the file named "LICENSE.txt" included with this software distribution # and also available online as http://sbml.org/software/libsbml/license.html # ----------------------------------------------------------------------------- import sys import unittest import libsbml class TestSpecies(unittest.TestCase): global S S = None def setUp(self): self.S = libsbml.Species(2,4) if (self.S == None): pass pass def tearDown(self): _dummyList = [ self.S ]; _dummyList[:] = []; del _dummyList pass def test_Species_create(self): self.assertTrue( self.S.getTypeCode() == libsbml.SBML_SPECIES ) self.assertTrue( self.S.getMetaId() == "" ) self.assertTrue( self.S.getNotes() == None ) self.assertTrue( self.S.getAnnotation() == None ) self.assertTrue( self.S.getId() == "" ) self.assertTrue( self.S.getName() == "" ) self.assertTrue( self.S.getCompartment() == "" ) self.assertTrue( self.S.getInitialAmount() == 0.0 ) self.assertTrue( self.S.getInitialConcentration() == 0.0 ) self.assertTrue( self.S.getSubstanceUnits() == "" ) self.assertTrue( self.S.getSpatialSizeUnits() == "" ) self.assertTrue( self.S.getHasOnlySubstanceUnits() == False ) self.assertTrue( self.S.getBoundaryCondition() == False ) self.assertTrue( self.S.getCharge() == 0 ) self.assertTrue( self.S.getConstant() == False ) self.assertEqual( False, self.S.isSetId() ) self.assertEqual( False, self.S.isSetName() ) self.assertEqual( False, self.S.isSetCompartment() ) self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( False, self.S.isSetInitialConcentration() ) self.assertEqual( False, self.S.isSetSubstanceUnits() ) self.assertEqual( False, self.S.isSetSpatialSizeUnits() ) self.assertEqual( False, self.S.isSetUnits() ) self.assertEqual( False, self.S.isSetCharge() ) self.assertEqual( True, self.S.isSetBoundaryCondition() ) self.assertEqual( True, self.S.isSetHasOnlySubstanceUnits() ) self.assertEqual( True, self.S.isSetConstant() ) pass def test_Species_createWithNS(self): xmlns = libsbml.XMLNamespaces() xmlns.add( "http://www.sbml.org", "testsbml") sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Species(sbmlns) self.assertTrue( object.getTypeCode() == libsbml.SBML_SPECIES ) self.assertTrue( object.getMetaId() == "" ) self.assertTrue( object.getNotes() == None ) self.assertTrue( object.getAnnotation() == None ) self.assertTrue( object.getLevel() == 2 ) self.assertTrue( object.getVersion() == 1 ) self.assertTrue( object.getNamespaces() != None ) self.assertTrue( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass def test_Species_free_NULL(self): _dummyList = [ None ]; _dummyList[:] = []; del _dummyList pass def test_Species_setCompartment(self): compartment = "cell"; self.S.setCompartment(compartment) self.assertTrue(( compartment == self.S.getCompartment() )) self.assertEqual( True, self.S.isSetCompartment() ) if (self.S.getCompartment() == compartment): pass self.S.setCompartment(self.S.getCompartment()) self.assertTrue(( compartment == self.S.getCompartment() )) self.S.setCompartment("") self.assertEqual( False, self.S.isSetCompartment() ) if (self.S.getCompartment() != None): pass pass def test_Species_setId(self): id = "Glucose"; self.S.setId(id) self.assertTrue(( id == self.S.getId() )) self.assertEqual( True, self.S.isSetId() ) if (self.S.getId() == id): pass self.S.setId(self.S.getId()) self.assertTrue(( id == self.S.getId() )) self.S.setId("") self.assertEqual( False, self.S.isSetId() ) if (self.S.getId() != None): pass pass def test_Species_setInitialAmount(self): self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( False, self.S.isSetInitialConcentration() ) self.S.setInitialAmount(1.2) self.assertEqual( True, self.S.isSetInitialAmount() ) self.assertEqual( False, self.S.isSetInitialConcentration() ) self.assertTrue( self.S.getInitialAmount() == 1.2 ) pass def test_Species_setInitialConcentration(self): self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( False, self.S.isSetInitialConcentration() ) self.S.setInitialConcentration(3.4) self.assertEqual( False, self.S.isSetInitialAmount() ) self.assertEqual( True, self.S.isSetInitialConcentration() ) self.assertTrue( self.S.getInitialConcentration() == 3.4 ) pass def test_Species_setName(self): name = "So_Sweet"; self.S.setName(name) self.assertTrue(( name == self.S.getName() )) self.assertEqual( True, self.S.isSetName() ) if (self.S.getName() == name): pass self.S.setName(self.S.getName()) self.assertTrue(( name == self.S.getName() )) self.S.setName("") self.assertEqual( False, self.S.isSetName() ) if (self.S.getName() != None): pass pass def test_Species_setSpatialSizeUnits(self): s = libsbml.Species(2,1) units = "volume"; s.setSpatialSizeUnits(units) self.assertTrue(( units == s.getSpatialSizeUnits() )) self.assertEqual( True, s.isSetSpatialSizeUnits() ) if (s.getSpatialSizeUnits() == units): pass s.setSpatialSizeUnits(s.getSpatialSizeUnits()) self.assertTrue(( units == s.getSpatialSizeUnits() )) s.setSpatialSizeUnits("") self.assertEqual( False, s.isSetSpatialSizeUnits() ) if (s.getSpatialSizeUnits() != None): pass _dummyList = [ s ]; _dummyList[:] = []; del _dummyList pass def test_Species_setSubstanceUnits(self): units = "item"; self.S.setSubstanceUnits(units) self.assertTrue(( units == self.S.getSubstanceUnits() )) self.assertEqual( True, self.S.isSetSubstanceUnits() ) if (self.S.getSubstanceUnits() == units): pass self.S.setSubstanceUnits(self.S.getSubstanceUnits()) self.assertTrue(( units == self.S.getSubstanceUnits() )) self.S.setSubstanceUnits("") self.assertEqual( False, self.S.isSetSubstanceUnits() ) if (self.S.getSubstanceUnits() != None): pass pass def test_Species_setUnits(self): units = "mole"; self.S.setUnits(units) self.assertTrue(( units == self.S.getUnits() )) self.assertEqual( True, self.S.isSetUnits() ) if (self.S.getSubstanceUnits() == units): pass self.S.setUnits(self.S.getSubstanceUnits()) self.assertTrue(( units == self.S.getUnits() )) self.S.setUnits("") self.assertEqual( False, self.S.isSetUnits() ) if (self.S.getSubstanceUnits() != None): pass pass def suite(): suite = unittest.TestSuite() suite.addTest(unittest.TestLoader.loadTestsFromTestCase(TestSpecies)) return suite if __name__ == "__main__": if unittest.TextTestRunner(verbosity=1).run(suite()).wasSuccessful() : sys.exit(0) else: sys.exit(1)