# @file TestRDFAnnotation2.rb
# @brief fomula units data unit tests
#
# @author Akiya Jouraku (Ruby conversion)
# @author Ben Bornstein
#
#
# ====== WARNING ===== WARNING ===== WARNING ===== WARNING ===== WARNING ======
#
# DO NOT EDIT THIS FILE.
#
# This file was generated automatically by converting the file located at
# src/annotation/test/TestRDFAnnotation2.cpp
# using the conversion program dev/utilities/translateTests/translateTests.pl.
# Any changes made here will be lost the next time the file is regenerated.
#
# -----------------------------------------------------------------------------
# This file is part of libSBML. Please visit http://sbml.org for more
# information about SBML, and the latest version of libSBML.
#
# Copyright 2005-2010 California Institute of Technology.
# Copyright 2002-2005 California Institute of Technology and
# Japan Science and Technology Corporation.
#
# This library is free software; you can redistribute it and/or modify it
# under the terms of the GNU Lesser General Public License as published by
# the Free Software Foundation. A copy of the license agreement is provided
# in the file named "LICENSE.txt" included with this software distribution
# and also available online as http://sbml.org/software/libsbml/license.html
# -----------------------------------------------------------------------------
require 'test/unit'
require 'libSBML'
class TestRDFAnnotation2 < Test::Unit::TestCase
def util_NaN
z = 0.0
return 0.0/z
end
def util_PosInf
z = 0.0
return 1.0/z
end
def util_NegInf
z = 0.0
return -1.0/z
end
def equals(*x)
case x.size
when 2
e, s = x
return e == s
when 1
e, = x
return e == @@oss.str()
end
end
def setup
filename = "../../sbml/annotation/test/test-data/annotation2.xml"
@@d2 = LibSBML::readSBML(filename)
@@m2 = @@d2.getModel()
end
def teardown
@@d2 = nil
end
def test_RDFAnnotation2_getModelHistory
history = @@m2.getModelHistory()
assert( history != nil )
mc = history.getCreator(0)
assert (( "Hucka" == mc.getFamilyName() ))
assert (( "Mike" == mc.getGivenName() ))
assert (( "mhucka@caltech.edu" == mc.getEmail() ))
assert (( "BNMC" == mc.getOrganisation() ))
mc1 = history.getCreator(1)
assert (( "Keating" == mc1.getFamilyName() ))
assert (( "Sarah" == mc1.getGivenName() ))
assert (( "skeating@caltech.edu" == mc1.getEmail() ))
assert (( "UH" == mc1.getOrganisation() ))
date = history.getCreatedDate()
assert( date.getYear() == 2005 )
assert( date.getMonth() == 2 )
assert( date.getDay() == 2 )
assert( date.getHour() == 14 )
assert( date.getMinute() == 56 )
assert( date.getSecond() == 11 )
assert( date.getSignOffset() == 0 )
assert( date.getHoursOffset() == 0 )
assert( date.getMinutesOffset() == 0 )
assert (( "2005-02-02T14:56:11Z" == date.getDateAsString() ))
date = history.getModifiedDate()
assert( date.getYear() == 2006 )
assert( date.getMonth() == 5 )
assert( date.getDay() == 30 )
assert( date.getHour() == 10 )
assert( date.getMinute() == 46 )
assert( date.getSecond() == 2 )
assert( date.getSignOffset() == 0 )
assert( date.getHoursOffset() == 0 )
assert( date.getMinutesOffset() == 0 )
assert (( "2006-05-30T10:46:02Z" == date.getDateAsString() ))
date = history.getModifiedDate(1)
assert( date.getYear() == 2007 )
assert( date.getMonth() == 1 )
assert( date.getDay() == 16 )
assert( date.getHour() == 15 )
assert( date.getMinute() == 31 )
assert( date.getSecond() == 52 )
assert( date.getSignOffset() == 0 )
assert( date.getHoursOffset() == 0 )
assert( date.getMinutesOffset() == 0 )
assert (( "2007-01-16T15:31:52Z" == date.getDateAsString() ))
end
def test_RDFAnnotation2_modelWithHistoryAndCVTerms
h = LibSBML::ModelHistory.new()
c = LibSBML::ModelCreator.new()
c.setFamilyName("Keating")
c.setGivenName("Sarah")
h.addCreator(c)
d = LibSBML::Date.new(2008,11,17,18,37,0,0,0,0)
h.setCreatedDate(d)
h.setModifiedDate(d)
@@m2.unsetModelHistory()
@@m2.setModelHistory(h)
cv = LibSBML::CVTerm.new()
cv.setQualifierType(LibSBML::BIOLOGICAL_QUALIFIER)
cv.setBiologicalQualifierType(LibSBML::BQB_IS_VERSION_OF)
cv.addResource("http://www.geneontology.org/#GO:0005892")
@@m2.addCVTerm(cv)
ann = LibSBML::RDFAnnotationParser.parseModelHistory(@@m2)
expected = "\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" Keating\n" +
" Sarah\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" 2008-11-17T18:37:00Z\n" +
" \n" +
" \n" +
" 2008-11-17T18:37:00Z\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
""
if (ann != nil)
assert_equal true, equals(expected,ann.toXMLString())
end
end
end
def test_RDFAnnotation2_modelWithHistoryAndMultipleModifiedDates
h = LibSBML::ModelHistory.new()
c = LibSBML::ModelCreator.new()
c.setFamilyName("Keating")
c.setGivenName("Sarah")
h.addCreator(c)
d = LibSBML::Date.new(2005,2,2,14,56,11)
h.setCreatedDate(d)
h.addModifiedDate(d)
h.addModifiedDate(d)
@@m2.unsetModelHistory()
@@m2.setModelHistory(h)
ann = LibSBML::RDFAnnotationParser.parseModelHistory(@@m2)
expected = "\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" Keating\n" +
" Sarah\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" \n" +
""
assert_equal true, equals(expected,ann.toXMLString())
end
def test_RDFAnnotation2_modelWithHistoryWithCharacterReference
h = LibSBML::ModelHistory.new()
c = LibSBML::ModelCreator.new()
c.setFamilyName("Dräger")
c.setGivenName("Andreas")
h.addCreator(c)
d = LibSBML::Date.new(2005,2,2,14,56,11)
h.setCreatedDate(d)
h.addModifiedDate(d)
@@m2.unsetModelHistory()
@@m2.setModelHistory(h)
ann = LibSBML::RDFAnnotationParser.parseModelHistory(@@m2)
expected = "\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" Dräger\n" +
" Andreas\n" +
" \n" +
" \n" +
" \n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" 2005-02-02T14:56:11Z\n" +
" \n" +
" \n" +
" \n" +
""
assert_equal true, equals(expected,ann.toXMLString())
end
$end