Author: Andreas Tille <tille@debian.org>
Last-Update: 2021-01-28
Bug-Debian: https://bugs.debian.org/838513
Description: Use Debian packaged libssw (while its not clear
 why two implementations of Smith-Waterman are needed at all)
Forwarded: not-needed
--- libvcflib.orig/CMakeLists.txt
+++ libvcflib/CMakeLists.txt
@@ -86,14 +86,13 @@
     src/pdflib.cpp
     src/cdflib.cpp
     src/split.cpp
-    src/ssw.hpp
-    src/ssw_cpp.hpp
     filevercmp/filevercmp.c
     )
 
 target_link_libraries(vcflib
     PkgConfig::SMITHWATERMAN
     PkgConfig::FASTAHACK
+    ssw
     )
 
 set(BINS
--- libvcflib.orig/src/Variant.h
+++ libvcflib/src/Variant.h
@@ -28,7 +28,7 @@
 #include "join.h"
 #include <tabix.hpp>
 #include <smithwaterman/SmithWatermanGotoh.h>
-#include "ssw_cpp.hpp"
+#include <ssw_cpp.h>
 #include "convert.h"
 #include "multichoose.h"
 #include <fastahack/Fasta.h>