Author: Andreas Tille <tille@debian.org>
Description: Prevent upstream Makefile from handling manpages as binaries
--- mafft-6.713-without-extensions.orig/core/Makefile
+++ mafft-6.713-without-extensions/core/Makefile
@@ -107,7 +107,7 @@
 all : $(PROGS) $(SCRIPTS)
 	cp $(SCRIPTS) ../scripts
 	chmod 755 ../scripts/*
-	cp $(PROGS) $(MANPAGES) ../binaries
+	cp $(PROGS) ../binaries
 	chmod 755 ../binaries/*
 	@echo done.
 
@@ -484,7 +484,7 @@
 	chmod 755 $(SCRIPTS)
 	$(INSTALL) $(SCRIPTS)  $(BINDIR)
 	chmod 755 $(PROGS)
-	$(INSTALL) $(PROGS) $(MANPAGES) $(LIBDIR)
+	$(INSTALL) $(PROGS) $(LIBDIR)
 	( cd $(BINDIR); \
 rm -f linsi ginsi einsi fftns fftnsi nwns nwnsi xinsi qinsi; \
 rm -f mafft-linsi mafft-ginsi mafft-einsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-xinsi mafft-qinsi; \
@@ -499,4 +499,4 @@
 
 	mkdir -p $(MANDIR)
 	chmod 755 $(MANDIR)
-	$(INSTALL) $(MANPAGES) $(MANDIR)
+	$(INSTALL) --mode=644 $(MANPAGES) $(MANDIR)