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\begin{document}

\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large TOPP and TOPPView Tutorial\\[1ex]\large Version: @CF_OPENMS_PACKAGE_VERSION_FULLSTRING@ }\\
\end{center}
\end{titlepage}

\pagenumbering{arabic}

\setcounter{tocdepth}{2}
\tableofcontents
\pagebreak

\section{Concepts}
	
	\input{TOPP_concepts}
	\pagebreak

\section{TOPPView main interface}
	
	\input{TOPPView_introduction}
	\pagebreak
	\input{TOPPView_views}
	\pagebreak
	\input{TOPPView_modes}
	\pagebreak
	\input{TOPPView_analysis}
	\pagebreak
	\input{TOPPView_editing}
	\pagebreak
	\input{TOPPView_hotkeys}
	\pagebreak

\section{Calling TOPP tools from TOPPView}

	\input{TOPPView_smoothing}
	\pagebreak
	\input{TOPPView_baseline_reduction}
	\pagebreak
	\input{TOPPView_peakpicking}
	\pagebreak
	\input{TOPPView_feature_detection_centroided}
	\pagebreak

\section{Using TOPPAS to create and run TOPP pipelines}

	\input{TOPPAS_general}
	\pagebreak
	\input{TOPPAS_interface}
	\pagebreak
	\input{TOPPAS_examples}

\section{Advanced Users: Tips \& Tricks}
    
  \input{TOPP_advanced}
	\pagebreak
  
\section{Scripting with TOPP}
	
	\input{TOPP_general}
	\pagebreak
	\input{TOPP_example_handling}
	\pagebreak
	\input{TOPP_example_signalprocessing}
	\pagebreak
	\input{TOPP_example_calibration}
	\pagebreak
	\input{TOPP_example_mapalignment}
	\pagebreak
	\input{TOPP_example_featuredetection}
	\pagebreak
	\input{TOPP_example_featuregrouping}
	\pagebreak
	\input{TOPP_example_id}
	\pagebreak
	\input{TOPP_example_ppp}
	\pagebreak
	\input{TOPP_example_convert}
	\pagebreak
	\input{TOPP_example_qualitycontrol}


\end{document}
