from ost import io, mol, settings
import unittest
import os
from ost.bindings import dssp


class TestSecStruct(unittest.TestCase):
  
  @unittest.skip("Incompatible with dssp >= 4")
  def testSecStruct(self):

    # unit test only makes sense, when a dssp binary is around
    try:
      # same check used in dssp binding
      dssp_path = settings.Locate(['dsspcmbi', 'dssp', 'mkdssp'],
                                  env_name='DSSP_EXECUTABLE')
    except:
      print("Could not find DSSP, could not compare sec struct assignment...")
      return

    dssp_ent = io.LoadPDB(os.path.join("testfiles", "1a0s.pdb"))
    ost_ent = io.LoadPDB(os.path.join("testfiles", "1a0s.pdb"))

    dssp.AssignDSSP(dssp_ent, dssp_bin=dssp_path)
    mol.alg.AssignSecStruct(ost_ent)

    for a, b in zip(dssp_ent.residues, ost_ent.residues):
      self.assertTrue(str(a.GetSecStructure()) == str(b.GetSecStructure()))
      

if __name__ == "__main__":

  from ost import testutils
  testutils.RunTests()