Index of /data/main/p/perm/0.4.0-1

• Parent Directory
• AlignmentsQ.cpp
• AlignmentsQ.h
• ChrIndex2GeneName.cpp
• ChrIndex2GeneName.h
• ChromosomeInBits.cpp
• ColorSpaceRead.cpp
• ColorSpaceRead.h
• FileInputBuffer.cpp
• FileInputBuffer.h
• FileOutputBuffer.cpp
• FileOutputBuffer.h
• Filename.cpp
• Filename.h
• Flags.cpp
• Flags.h
• GenomeInBits.cpp
• GenomeInBits.h
• GenomeNTdata.cpp
• GenomeNTdata.h
• Genome_Index.cpp
• Genome_Index.h
• Genome_Index_Table.cpp
• Genome_Index_Table.h
• Genome_Index_TableQ.cpp
• Genome_Index_TableQ.h
• HashIndexT.cpp
• HashIndexT.h
• Index_Table.cpp
• Index_Table.h
• LongReadsSet.cpp
• LongReadsSet.h
• MappingResult.cpp
• MappingResult.h
• MismatchScores.cpp
• MismatchScores.h
• PairedReadsMapping.cpp
• PairedReadsMapping.h
• PairedReadsSet.cpp
• PairedReadsSet.h
• ParameterList.cpp
• ParameterList.h
• ParseReadsOpts.cpp
• ParseReadsOpts.h
• PerM.cpp
• PerMTest.cpp
• ReSeq_bits.cpp
• ReadInBits.cpp
• ReadInBits.h
• ReadInBitsSet.cpp
• ReadInBitsSet.h
• ReadsFileParser.cpp
• ReadsFileParser.h
• ReadsMapping.cpp
• ReadsMapping.h
• ReadsMappingFlags.cpp
• ReadsMappingFlags.h
• ReadsMappingStats.cpp
• ReadsMappingStats.h
• ReadsQualScores.cpp
• ReadsQualScores.h
• SeedPattern.cpp
• SeedPattern.h
• ShortReadUtil.cpp
• ShortReadUtil.h
• TestChromosomeNTdata.cpp
• TestChromosomeNTdata.h
• TestGenome_Index_TableQ.cpp
• TestGenome_Index_TableQ.h
• bitsOperationUtil.cpp
• bitsOperationUtil.h
• boolFlagArray.cpp
• boolFlagArray.h
• chdir.cpp
• chdir.h
• chromosomeInBits.h
• chromosomeNTdata.cpp
• chromosomeNTdata.h
• debian/
• makefile
• minQ.cpp
• minQ.h
• refInBinFile.cpp
• refInBinFile.h
• refInBinary.h
• resource.h
• seedOptions.h
• stdafx.cpp
• stdafx.h