Index of /data/main/p/phyx/1.3+ds-2/src

• Parent Directory
• Makefile.in
• TEST/
• aa2cdn.cpp
• aa2cdn.h
• bd_fit.cpp
• bd_fit.h
• bd_sim.cpp
• bd_sim.h
• blas.f
• branch_segment.cpp
• branch_segment.h
• citations.cpp
• citations.h
• clean_seq.cpp
• clean_seq.h
• clean_tree.cpp
• clean_tree.h
• clock.f
• collapse_tree.cpp
• collapse_tree.h
• comp_test.cpp
• comp_test.h
• concat.cpp
• concat.h
• config.h.in
• configure.ac
• constants.h
• cont_models.cpp
• cont_models.h
• edlib.cpp
• edlib.h
• expokit.f
• generate_manpages.py
• lapack.f
• log.cpp
• log.h
• log_manip.cpp
• log_manip.h
• main_aa2cdn.cpp
• main_bd_fit.cpp
• main_bd_sim.cpp
• main_boot.cpp
• main_bp.cpp
• main_cat.cpp
• main_clsq.cpp
• main_cltr.cpp
• main_colt.cpp
• main_comp.cpp
• main_consq.cpp
• main_contrates.cpp
• main_fqfilt.cpp
• main_log.cpp
• main_lssq.cpp
• main_lstr.cpp
• main_mono.cpp
• main_mrca.cpp
• main_mrca_cut.cpp
• main_mrca_name.cpp
• main_nj.cpp
• main_nni.cpp
• main_nw.cpp
• main_poly.cpp
• main_recode.cpp
• main_revcomp.cpp
• main_rls.cpp
• main_rlt.cpp
• main_rmk.cpp
• main_rms.cpp
• main_rmt.cpp
• main_rr.cpp
• main_s2fa.cpp
• main_s2nex.cpp
• main_s2phy.cpp
• main_seqgen.cpp
• main_ssort.cpp
• main_sstat.cpp
• main_strec.cpp
• main_sw.cpp
• main_t2new.cpp
• main_t2nex.cpp
• main_tcol.cpp
• main_tcomb.cpp
• main_tgen.cpp
• main_tlate.cpp
• main_trt.cpp
• main_tscale.cpp
• main_upgma.cpp
• main_vcf2fa.cpp
• man/
• mataid.f
• my_expokit.f
• my_matexp.f
• nj.cpp
• nj.h
• node.cpp
• node.h
• node_object.h
• optimize_cont_models_nlopt.cpp
• optimize_cont_models_nlopt.h
• optimize_state_reconstructor_nlopt.cpp
• optimize_state_reconstructor_nlopt.h
• optimize_state_reconstructor_periods_nlopt.cpp
• optimize_state_reconstructor_periods_nlopt.h
• orphan_files/
• pairwise_alignment.cpp
• pairwise_alignment.h
• polytomy.cpp
• polytomy.h
• python_trees.py
• rate_model.cpp
• rate_model.h
• recode.cpp
• recode.h
• relabel.cpp
• relabel.h
• run_tests.py
• seq_gen.cpp
• seq_gen.h
• seq_info.cpp
• seq_info.h
• seq_models.cpp
• seq_models.h
• seq_reader.cpp
• seq_reader.h
• seq_sample.cpp
• seq_sample.h
• seq_utils.cpp
• seq_utils.h
• sequence.cpp
• sequence.h
• sstat.cpp
• sstat.h
• state_reconstructor.cpp
• state_reconstructor.h
• string_node_object.h
• superdouble.cpp
• superdouble.h
• tgen.cpp
• tgen.h
• timer.cpp
• timer.h
• tlate.cpp
• tlate.h
• tree.cpp
• tree.h
• tree_info.cpp
• tree_info.h
• tree_reader.cpp
• tree_reader.h
• tree_utils.cpp
• tree_utils.h
• tscale.cpp
• tscale.h
• upgma.cpp
• upgma.h
• utils.cpp
• utils.h
• vcf_reader.cpp
• vcf_reader.h
• vector_node_object.h